RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W KRE9P39005 276 aa3□□□□□ -1.93
UPF3YGR072W ATM1P40416 690 aa3□□□□□ -1.93
UPF3YGR072W RPR2P40571 144 aa3□□□□□ -1.93
UPF3YGR072W MKT1P40850 830 aaKnown RBP3□□□□□ -1.93
UPF3YGR072W YFL067WP43537 175 aa3□□□□□ -1.93
UPF3YGR072W YFR016CP43597 1233 aaKnown RBP3□□□□□ -1.93
UPF3YGR072W PDR16P53860 351 aaKnown RBP3□□□□□ -1.93
UPF3YGR072W YNL143CP53908 130 aa3□□□□□ -1.93
UPF3YGR072W ARK1P53974 638 aa3□□□□□ -1.93
UPF3YGR072W REX3Q12090 404 aa3□□□□□ -1.93
UPF3YGR072W YBR298C-AQ8TGK4 73 aa3□□□□□ -1.93
UPF3YGR072W RAD61Q99359 647 aa3□□□□□ -1.93
UPF3YGR072W RPL12AP0CX53 165 aaKnown RBP2.99□□□□□ -1.93
UPF3YGR072W RPL12BP0CX54 165 aa2.99□□□□□ -1.93
UPF3YGR072W SCH9P11792 824 aaKnown RBP2.99□□□□□ -1.93
UPF3YGR072W CPR1P14832 162 aaKnown RBP2.99□□□□□ -1.93
UPF3YGR072W THR4P16120 514 aaKnown RBP2.99□□□□□ -1.93
UPF3YGR072W SLY1P22213 666 aa2.99□□□□□ -1.93
UPF3YGR072W CPR3P25719 182 aa2.99□□□□□ -1.93
UPF3YGR072W MRP4P32902 394 aa2.99□□□□□ -1.93
UPF3YGR072W RRT5P43607 289 aa2.99□□□□□ -1.93
UPF3YGR072W SFH5P47008 294 aa2.99□□□□□ -1.93
UPF3YGR072W HST1P53685 503 aa2.99□□□□□ -1.93
UPF3YGR072W ALF1P53904 254 aa2.99□□□□□ -1.93
UPF3YGR072W URC2Q04411 772 aa2.99□□□□□ -1.93
UPF3YGR072W SNT309Q06091 175 aaPredicted RBP2.99□□□□□ -1.93
UPF3YGR072W SPH1Q06160 661 aa2.99□□□□□ -1.93
UPF3YGR072W PML1Q07930 204 aaPredicted RBP2.99□□□□□ -1.93
UPF3YGR072W PEX27Q08580 376 aa2.99□□□□□ -1.93
UPF3YGR072W NCA2Q12374 616 aa2.99□□□□□ -1.93
UPF3YGR072W RRP12Q12754 1228 aaKnown RBP2.99□□□□□ -1.93
UPF3YGR072W SRB2P34162 210 aa2.98□□□□□ -1.93
UPF3YGR072W SKT5P34226 696 aa2.98□□□□□ -1.93
UPF3YGR072W MIX23P38162 196 aa2.98□□□□□ -1.93
UPF3YGR072W SPP381P38282 291 aaPredicted RBP2.98□□□□□ -1.93
UPF3YGR072W MTC6P38849 526 aa2.98□□□□□ -1.93
UPF3YGR072W FAA2P39518 744 aa2.98□□□□□ -1.93
UPF3YGR072W SNL1P40548 159 aa2.98□□□□□ -1.93
UPF3YGR072W NAS2P40555 220 aa2.98□□□□□ -1.93
UPF3YGR072W YJL213WP40896 331 aa2.98□□□□□ -1.93
UPF3YGR072W TOS3P43637 560 aa2.98□□□□□ -1.93
UPF3YGR072W AZR1P50080 613 aa2.98□□□□□ -1.93
UPF3YGR072W SPR6Q01684 191 aa2.98□□□□□ -1.93
UPF3YGR072W UTP6Q02354 440 aaKnown RBP2.98□□□□□ -1.93
UPF3YGR072W YMR310CQ04867 317 aaPredicted RBP2.98□□□□□ -1.93
UPF3YGR072W ECM7Q06200 448 aa2.98□□□□□ -1.93
UPF3YGR072W SNX3Q08826 162 aaKnown RBP2.98□□□□□ -1.93
UPF3YGR072W PPT2Q12036 173 aa2.98□□□□□ -1.93
UPF3YGR072W YLR108CQ12259 485 aa2.98□□□□□ -1.93
UPF3YGR072W RNH203Q12338 110 aa2.98□□□□□ -1.93
UPF3YGR072W HEM2P05373 342 aa2.97□□□□□ -1.93
UPF3YGR072W OPI3P05375 206 aa2.97□□□□□ -1.93
UPF3YGR072W TPK3P05986 398 aa2.97□□□□□ -1.93
UPF3YGR072W STE3P06783 470 aa2.97□□□□□ -1.93
UPF3YGR072W REV1P12689 985 aa2.97□□□□□ -1.93
UPF3YGR072W MCK1P21965 375 aaKnown RBP2.97□□□□□ -1.93
UPF3YGR072W YCL068CP25593 260 aa2.97□□□□□ -1.93
UPF3YGR072W PSO2P30620 661 aa2.97□□□□□ -1.93
UPF3YGR072W HMX1P32339 317 aa2.97□□□□□ -1.93
UPF3YGR072W MUD1P32605 298 aaKnown RBP2.97□□□□□ -1.93
UPF3YGR072W TIF5P38431 405 aaKnown RBP2.97□□□□□ -1.93
UPF3YGR072W MSG5P38590 489 aa2.97□□□□□ -1.93
UPF3YGR072W STP2P38704 541 aa2.97□□□□□ -1.93
UPF3YGR072W STE24P47154 453 aa2.97□□□□□ -1.93
UPF3YGR072W EFM3P47163 339 aa2.97□□□□□ -1.93
UPF3YGR072W SHE4P51534 789 aa2.97□□□□□ -1.93
UPF3YGR072W COS10P52924 374 aa2.97□□□□□ -1.93
UPF3YGR072W YGR117CP53270 476 aa2.97□□□□□ -1.93
UPF3YGR072W GOR1P53839 350 aa2.97□□□□□ -1.93
UPF3YGR072W BCH1Q05029 724 aa2.97□□□□□ -1.93
UPF3YGR072W TLG2Q08144 397 aa2.97□□□□□ -1.93
UPF3YGR072W LDS2Q08218 356 aa2.97□□□□□ -1.93
UPF3YGR072W RTC5Q12108 567 aaKnown RBP2.97□□□□□ -1.93
UPF3YGR072W GLE1Q12315 538 aa2.97□□□□□ -1.93
UPF3YGR072W GDH1P07262 454 aaKnown RBP2.96□□□□□ -1.94
UPF3YGR072W MAS1P10507 462 aa2.96□□□□□ -1.94
UPF3YGR072W HEM15P16622 393 aa2.96□□□□□ -1.94
UPF3YGR072W ITR1P30605 584 aa2.96□□□□□ -1.94
UPF3YGR072W EFB1P32471 206 aaKnown RBP2.96□□□□□ -1.94
UPF3YGR072W LOS1P33418 1100 aaPredicted RBP2.96□□□□□ -1.94
UPF3YGR072W CHK1P38147 527 aa2.96□□□□□ -1.94
UPF3YGR072W OST1P41543 476 aaKnown RBP2.96□□□□□ -1.94
UPF3YGR072W MDE1P47095 244 aa2.96□□□□□ -1.94
UPF3YGR072W YDL186WP48568 277 aa2.96□□□□□ -1.94
UPF3YGR072W MSO1P53604 210 aaKnown RBP2.96□□□□□ -1.94
UPF3YGR072W CCE1Q03702 353 aa2.96□□□□□ -1.94
UPF3YGR072W RRN11Q04712 507 aa2.96□□□□□ -1.94
UPF3YGR072W NOP6Q07623 225 aaKnown RBP2.96□□□□□ -1.94
UPF3YGR072W HNT3Q08702 217 aa2.96□□□□□ -1.94
UPF3YGR072W THP3Q12049 470 aaKnown RBP2.96□□□□□ -1.94
UPF3YGR072W YOP1Q12402 180 aa2.96□□□□□ -1.94
UPF3YGR072W POM152P39685 1337 aa2.95□□□□□ -1.94
UPF3YGR072W MRPL8P22353 238 aa2.95□□□□□ -1.94
UPF3YGR072W ATS1P31386 333 aa2.95□□□□□ -1.94
UPF3YGR072W MSK1P32048 576 aa2.95□□□□□ -1.94
UPF3YGR072W MNS1P32906 549 aa2.95□□□□□ -1.94
UPF3YGR072W SDH3P33421 198 aa2.95□□□□□ -1.94
UPF3YGR072W YHR218WP38899 603 aa2.95□□□□□ -1.94
UPF3YGR072W PES4P39684 611 aa2.95□□□□□ -1.94
UPF3YGR072W IDP2P41939 412 aa2.95□□□□□ -1.94
Retrieved 100 of 5,963 RNA–protein pairs in 169 ms