RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 F2P00734 622 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 MMP1P03956 469 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 POLR2MP0CAP2 368 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 HOXD8P13378 290 aaPredicted RBP9.98□□□□□ -0.81
TRIM28-214ENST00000600840 SYT1P21579 422 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 UBA1P22314 1058 aaKnown RBP9.98□□□□□ -0.81
TRIM28-214ENST00000600840 KCNA5P22460 613 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 NAPAP54920 295 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 AKAP17AQ02040 695 aaKnown RBP9.98□□□□□ -0.81
TRIM28-214ENST00000600840 LAMC2Q13753 1193 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 MBTPS1Q14703 1052 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 MFSD10Q14728 455 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 DGKDQ16760 1214 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 KIAA0753Q2KHM9 967 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 TRIM71Q2Q1W2 868 aaKnown RBP9.98□□□□□ -0.81
TRIM28-214ENST00000600840 EARS2Q5JPH6 523 aaKnown RBP9.98□□□□□ -0.81
TRIM28-214ENST00000600840 CELF3Q5SZQ8 465 aaKnown RBP9.98□□□□□ -0.81
TRIM28-214ENST00000600840 HERC6Q8IVU3 1022 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 PPTC7Q8NI37 304 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 C16orf70Q9BSU1 422 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 FOXD4L1Q9NU39 408 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 RTEL1Q9NZ71 1219 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 PCDHA6Q9UN73 950 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 PCDHA4Q9UN74 947 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 ZDHHC9Q9Y397 364 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 PCDHA8Q9Y5H6 950 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 FRMPD4Q14CM0 1322 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 SIP14410 1827 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 BTBD18B2RXH4 712 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 CKBP12277 381 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 U2AF2P26368 475 aaKnown RBP eCLIP9.97□□□□□ -0.81
TRIM28-214ENST00000600840 DEFB103AP81534 67 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 BFSP2Q13515 415 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 BECN1Q14457 450 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 LARP1BQ659C4 914 aaKnown RBP9.97□□□□□ -0.81
TRIM28-214ENST00000600840 GALNT17Q6IS24 598 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 BLIDQ8IZY5 108 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 RETREG2Q8NC44 543 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 SPATA33Q96N06 139 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 SLC9A7Q96T83 725 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 FTOQ9C0B1 505 aaKnown RBP eCLIP9.97□□□□□ -0.81
TRIM28-214ENST00000600840 TMEM260Q9NX78 707 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 MTUS1Q9ULD2 1270 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 MTMR6Q9Y217 621 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 NOD1Q9Y239 953 aa9.97□□□□□ -0.81
TRIM28-214ENST00000600840 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-214ENST00000600840 KIF28PB7ZC32 967 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 PPFIA4O75335 1185 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 PFKMP08237 780 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 SELPP16109 830 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 GNA11P29992 359 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 CCND2P30279 289 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 RFC2P35250 354 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 ADCY7P51828 1080 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 NLRP5P59047 1200 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 GUCY1B3Q02153 619 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 RBL2Q08999 1139 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 NR5A1Q13285 461 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 PKP1Q13835 747 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 UBE2SQ16763 222 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 LEXMQ3ZCV2 418 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 ZNF618Q5T7W0 954 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 PTCRAQ6ISU1 281 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-214ENST00000600840 HFE2Q6ZVN8 426 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 LRRC8DQ7L1W4 858 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 C7orf31Q8N865 590 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 SPRYD3Q8NCJ5 442 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 CCDC148Q8NFR7 591 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 CCDC12Q8WUD4 166 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-214ENST00000600840 C8orf76Q96K31 380 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 INPP4AQ96PE3 977 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-214ENST00000600840 C6orf50Q9HD87 102 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 ZNF318Q5VUA4 2279 aa9.96□□□□□ -0.82
TRIM28-214ENST00000600840 FAM205CA6NFA0 338 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 SPATA31C2B4DYI2 1134 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 DCXO43602 365 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 ATP9AO75110 1047 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 FOSP01100 380 aaPredicted RBP9.95□□□□□ -0.82
TRIM28-214ENST00000600840 CXCL10P02778 98 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 LGALS2P05162 132 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 ALADP13716 330 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 ICAM3P32942 547 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 WDR5P61964 334 aaKnown RBP9.95□□□□□ -0.82
TRIM28-214ENST00000600840 CYFIP1Q7L576 1253 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 TRIM50Q86XT4 487 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 DIS3L2Q8IYB7 885 aaKnown RBP9.95□□□□□ -0.82
TRIM28-214ENST00000600840 FAM184AQ8NB25 1140 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 CAGE1Q8TC20 777 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 RASGRP4Q8TDF6 673 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 AFAP1L1Q8TED9 768 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 CUL5Q93034 780 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 GLT8D2Q9H1C3 349 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 FOXP1Q9H334 677 aaPredicted RBP9.95□□□□□ -0.82
TRIM28-214ENST00000600840 SUGCTQ9HAC7 445 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 MLXIPQ9HAP2 919 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 DAXXQ9UER7 740 aaPredicted RBP9.95□□□□□ -0.82
TRIM28-214ENST00000600840 TRANK1O15050 2925 aa9.95□□□□□ -0.82
TRIM28-214ENST00000600840 MICAL3Q7RTP6 2002 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 POTEB3A0JP26 581 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 H3BQ06 376 aaPredicted RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms