RNA–Protein interactions for RNA: YNL232W

CSL4, Transcript of Exosome non-catalytic core component, yeast

Gene CSL4, Length 879 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSL4	YNL232W	YOR378W	Q08902	515 aa		5.37	□□□□□ -1.55
CSL4	YNL232W	YPR071W	Q12346	211 aa		5.37	□□□□□ -1.55
CSL4	YNL232W	YOR032W-A	Q8TGS1	66 aa		5.37	□□□□□ -1.55
CSL4	YNL232W	MDN1	Q12019	4910 aa	Known RBP	5.36	□□□□□ -1.55
CSL4	YNL232W	SPS100	P13130	326 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	RSR1	P13856	272 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	CMK1	P27466	446 aa	Known RBP	5.36	□□□□□ -1.55
CSL4	YNL232W	URA10	P30402	227 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	HXT4	P32467	576 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	ASC1	P38011	319 aa	Known RBP	5.36	□□□□□ -1.55
CSL4	YNL232W	YBR184W	P38299	523 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	MSG5	P38590	489 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	APE4	P38821	490 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	HXT6	P39003	570 aa	Known RBP	5.36	□□□□□ -1.55
CSL4	YNL232W	HXT7	P39004	570 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	PRM2	P40534	656 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	ECO1	P43605	281 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	SRB7	P47822	140 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	CLD1	P53264	445 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	SKI8	Q02793	397 aa	Predicted RBP	5.36	□□□□□ -1.55
CSL4	YNL232W	TDA9	Q04545	1251 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	ATG23	Q06671	453 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	RRP40	Q08285	240 aa	Known RBP	5.36	□□□□□ -1.55
CSL4	YNL232W	APL4	Q12028	832 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	REX3	Q12090	404 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	YPR011C	Q12251	326 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	RRP42	Q12277	265 aa	Predicted RBP	5.36	□□□□□ -1.55
CSL4	YNL232W	PAR32	Q12515	295 aa	Known RBP	5.36	□□□□□ -1.55
CSL4	YNL232W	SRN2	Q99176	213 aa		5.36	□□□□□ -1.55
CSL4	YNL232W	ATP4	P05626	244 aa		5.35	□□□□□ -1.55
CSL4	YNL232W	RRP43	P25359	394 aa	Predicted RBP	5.35	□□□□□ -1.55
CSL4	YNL232W	YIM1	P28625	365 aa		5.35	□□□□□ -1.55
CSL4	YNL232W	FRT2	P39734	528 aa		5.35	□□□□□ -1.55
CSL4	YNL232W	SNM1	P40993	198 aa		5.35	□□□□□ -1.55
CSL4	YNL232W	GPI8	P49018	411 aa		5.35	□□□□□ -1.55
CSL4	YNL232W	BOL2	P53082	120 aa		5.35	□□□□□ -1.55
CSL4	YNL232W	MTG1	Q03151	367 aa	Predicted RBP	5.35	□□□□□ -1.55
CSL4	YNL232W	CDC123	Q05791	360 aa		5.35	□□□□□ -1.55
CSL4	YNL232W	TDA5	Q06417	326 aa	Known RBP	5.35	□□□□□ -1.55
CSL4	YNL232W	YPR174C	Q06616	221 aa	Predicted RBP	5.35	□□□□□ -1.55
CSL4	YNL232W	ARG4	P04076	463 aa	Predicted RBP	5.34	□□□□□ -1.55
CSL4	YNL232W	SSC1	P0CS90	654 aa	Known RBP	5.34	□□□□□ -1.55
CSL4	YNL232W	GUK1	P15454	187 aa	Known RBP	5.34	□□□□□ -1.55
CSL4	YNL232W	PTC6	P25646	442 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	MGT1	P26188	188 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	MTR2	P34232	184 aa	Known RBP	5.34	□□□□□ -1.55
CSL4	YNL232W	RRN3	P36070	627 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	YBR062C	P38239	180 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	TDP1	P38319	544 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	IES5	P40060	125 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	MAD2	P40958	196 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	YJL163C	P46996	555 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	YJL043W	P47053	257 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	STE24	P47154	453 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	ASI2	P53895	289 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	GOT1	Q03554	138 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	RCF1	Q03713	159 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	CRR1	Q05790	422 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	CUE5	Q08412	411 aa	Known RBP	5.34	□□□□□ -1.55
CSL4	YNL232W	RSA1	Q08932	381 aa		5.34	□□□□□ -1.55
CSL4	YNL232W	MRPL10	P36520	322 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	POP4	P38336	279 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	MUP3	P38734	546 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	EMP65	P40085	556 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	XBP1	P40489	647 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	EFM4	P40516	257 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	IRC6	P43615	237 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	YGR067C	P53243	804 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	YNL260C	P53846	198 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	BOP3	P53958	396 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	GAS3	Q03655	524 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	VPS38	Q05919	439 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	CRN1	Q06440	651 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	GRC3	Q07845	632 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	NCE102	Q12207	173 aa	RIP-Chip data	5.33	□□□□□ -1.56	not detected
CSL4	YNL232W	UBX3	Q12229	455 aa		5.33	□□□□□ -1.56
CSL4	YNL232W	TMA7	Q3E764	64 aa	Known RBP	5.33	□□□□□ -1.56
CSL4	YNL232W	HXK2	P04807	486 aa	Known RBP	5.32	□□□□□ -1.56
CSL4	YNL232W	RAD1	P06777	1100 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	VPS33	P20795	691 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	APN1	P22936	367 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	TRX3	P25372	127 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	ERG9	P29704	444 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	PTM1	P32857	523 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	PPZ2	P33329	710 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	YKL100C	P34248	587 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	MAL32	P38158	584 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	RIX1	P38883	763 aa	Predicted RBP	5.32	□□□□□ -1.56
CSL4	YNL232W	FAD1	P38913	306 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	MKC7	P53379	596 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	PDR16	P53860	351 aa	Known RBP	5.32	□□□□□ -1.56
CSL4	YNL232W	CGI121	Q03705	181 aa	Known RBP	5.32	□□□□□ -1.56
CSL4	YNL232W	TAF12	Q03761	539 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	SPC19	Q03954	165 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	APC4	Q04601	652 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	GAS2	Q06135	555 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	RRP9	Q06506	573 aa	Known RBP	5.32	□□□□□ -1.56
CSL4	YNL232W	RAD34	Q06665	692 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	ENV7	Q12003	364 aa		5.32	□□□□□ -1.56
CSL4	YNL232W	AIM41	Q12032	185 aa		5.32	□□□□□ -1.56

Retrieved 100 of 5,963 RNA–protein pairs in 26.1 ms