RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROT1	YMR200W	LOH1	P47055	219 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	YIP4	P53093	235 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	YGL117W	P53133	265 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	ERG26	P53199	349 aa	Known RBP	4.62	□□□□□ -1.67
ROT1	YMR200W	DRN1	P53255	507 aa	Known RBP	4.62	□□□□□ -1.67
ROT1	YMR200W	MAL12	P53341	584 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	DSL1	P53847	754 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	YNL092W	P53934	400 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	RLI1	Q03195	608 aa	Known RBP	4.62	□□□□□ -1.67
ROT1	YMR200W	BNA7	Q04066	261 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	URH1	Q04179	340 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	GEP3	Q08622	556 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	TGS1	Q12052	315 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	GLE1	Q12315	538 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	PAA1	Q12447	191 aa	Known RBP	4.62	□□□□□ -1.67
ROT1	YMR200W	ZPS1	Q12512	249 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	CHO2	P05374	869 aa	Known RBP	4.61	□□□□□ -1.67
ROT1	YMR200W	RAP1	P11938	827 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	SGV1	P23293	657 aa	Known RBP	4.61	□□□□□ -1.67
ROT1	YMR200W	CWP1	P28319	239 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	ITR1	P30605	584 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	SIN4	P32259	974 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	RPC34	P32910	317 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	RRN10	P38204	145 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	IML3	P38265	245 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	RTC2	P38279	296 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	PHM8	P40025	321 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	LAS21	P40367	830 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	SNL1	P40548	159 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	SPG5	P42933	373 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	BNA3	P47039	444 aa	Known RBP	4.61	□□□□□ -1.67
ROT1	YMR200W	RET3	P53600	189 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	SLG1	P54867	378 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	EMI2	Q04409	500 aa	Known RBP	4.61	□□□□□ -1.67
ROT1	YMR200W	COX20	Q04935	205 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	MDM30	Q05930	598 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	RDR1	Q08904	546 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	RRP12	Q12754	1228 aa	Known RBP	4.61	□□□□□ -1.67
ROT1	YMR200W	CMC2	Q3E7A4	109 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	YOS9	Q99220	542 aa		4.61	□□□□□ -1.67
ROT1	YMR200W	PGK1	P00560	416 aa	Known RBP	4.6	□□□□□ -1.67
ROT1	YMR200W	SCEI	P03882	235 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	ADE4	P04046	510 aa	Known RBP	4.6	□□□□□ -1.67
ROT1	YMR200W	MSF1	P08425	469 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	PRP16	P15938	1071 aa	Predicted RBP	4.6	□□□□□ -1.67
ROT1	YMR200W	YPK2	P18961	677 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	MBR1	P23493	339 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	PTC6	P25646	442 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	PRR1	P28708	518 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	GDA1	P32621	518 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	VBA2	P38358	474 aa	Known RBP	4.6	□□□□□ -1.67
ROT1	YMR200W	ANS1	P38832	159 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	YHR177W	P38867	453 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	PAC11	P40960	533 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	CDC40	P40968	455 aa	Predicted RBP	4.6	□□□□□ -1.67
ROT1	YMR200W	HSH155	P49955	971 aa	Known RBP	4.6	□□□□□ -1.67
ROT1	YMR200W	SLT2	Q00772	484 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	RSM23	Q01163	450 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	YDL057W	Q07379	328 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	SYO1	Q07395	620 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	NSE1	Q07913	336 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	GET4	Q12125	312 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	PKH2	Q12236	1081 aa	Known RBP	4.6	□□□□□ -1.67
ROT1	YMR200W	LCB4	Q12246	624 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	YDR262W	Q12331	272 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	RMD5	Q12508	421 aa		4.6	□□□□□ -1.67
ROT1	YMR200W	SSK22	P25390	1331 aa	Predicted RBP	4.6	□□□□□ -1.67
ROT1	YMR200W	YLL053C	P0CD98	152 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	RPL18A	P0CX49	186 aa	Known RBP	4.59	□□□□□ -1.67
ROT1	YMR200W	RPL18B	P0CX50	186 aa	Known RBP	4.59	□□□□□ -1.67
ROT1	YMR200W	ATP10	P18496	279 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	CSM1	P25651	190 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	CIN8	P27895	1000 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	ATP11	P32453	318 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	SKG6	P32900	734 aa	Predicted RBP	4.59	□□□□□ -1.67
ROT1	YMR200W	SOR1	P35497	357 aa	Known RBP	4.59	□□□□□ -1.67
ROT1	YMR200W	KDX1	P36005	433 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	HOT13	P36078	116 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	YPT10	P38146	199 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	RRP4	P38792	359 aa	Known RBP	4.59	□□□□□ -1.67
ROT1	YMR200W	XBP1	P40489	647 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	COG2	P53271	262 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	CPR8	P53728	308 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	AAT1	Q01802	451 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	MRP51	Q02950	344 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	SHS1	Q07657	551 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	SOR2	Q07786	357 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	THP1	Q08231	455 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	DNL4	Q08387	944 aa	Predicted RBP	4.59	□□□□□ -1.67
ROT1	YMR200W	RPS10A	Q08745	105 aa	Predicted RBP	4.59	□□□□□ -1.67
ROT1	YMR200W	ATG31	Q12421	196 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	Q0010	Q9ZZX9	128 aa		4.59	□□□□□ -1.67
ROT1	YMR200W	TDH2	P00358	332 aa	Known RBP	4.58	□□□□□ -1.68
ROT1	YMR200W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
ROT1	YMR200W	RAD3	P06839	778 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	PEP4	P07267	405 aa	Known RBP	4.58	□□□□□ -1.68
ROT1	YMR200W	POL30	P15873	258 aa	Known RBP	4.58	□□□□□ -1.68
ROT1	YMR200W	APA2	P22108	325 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	YSR3	P23501	404 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	GPI12	P23797	304 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms