RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C RET3P53600 189 aa5.66□□□□□ -1.5
DEF1YKL054C RSM23Q01163 450 aa5.66□□□□□ -1.5
DEF1YKL054C FUS2Q05670 677 aa5.66□□□□□ -1.5
DEF1YKL054C PEX27Q08580 376 aa5.66□□□□□ -1.5
DEF1YKL054C YOR029WQ12243 111 aa5.66□□□□□ -1.5
DEF1YKL054C RAV1P47104 1357 aa5.65□□□□□ -1.5
DEF1YKL054C SPE2P21182 396 aa5.65□□□□□ -1.5
DEF1YKL054C ECM25P32525 599 aa5.65□□□□□ -1.5
DEF1YKL054C LIP5P32875 414 aa5.65□□□□□ -1.5
DEF1YKL054C SAS2P40963 338 aa5.65□□□□□ -1.5
DEF1YKL054C BUL1P48524 976 aa5.65□□□□□ -1.5
DEF1YKL054C PYK2P52489 506 aaKnown RBP5.65□□□□□ -1.5
DEF1YKL054C SYO1Q07395 620 aa5.65□□□□□ -1.5
DEF1YKL054C DNL4Q08387 944 aaPredicted RBP5.65□□□□□ -1.5
DEF1YKL054C YOR365CQ08844 703 aa5.65□□□□□ -1.5
DEF1YKL054C RKI1Q12189 258 aa5.65□□□□□ -1.5
DEF1YKL054C RUP1Q12242 671 aa5.65□□□□□ -1.5
DEF1YKL054C PRP46Q12417 451 aaPredicted RBP5.65□□□□□ -1.5
DEF1YKL054C OSM1P21375 501 aaKnown RBP5.64□□□□□ -1.51
DEF1YKL054C LCP5P40079 357 aaPredicted RBP5.64□□□□□ -1.51
DEF1YKL054C SYG1P40528 902 aa5.64□□□□□ -1.51
DEF1YKL054C BNA3P47039 444 aaKnown RBP5.64□□□□□ -1.51
DEF1YKL054C YJR011CP47086 261 aaPredicted RBP5.64□□□□□ -1.51
DEF1YKL054C YGR151CP53287 111 aa5.64□□□□□ -1.51
DEF1YKL054C RTC4P53850 401 aa5.64□□□□□ -1.51
DEF1YKL054C TAF12Q03761 539 aa5.64□□□□□ -1.51
DEF1YKL054C DBR1P24309 405 aaKnown RBP5.64□□□□□ -1.51
DEF1YKL054C PBN1P25580 416 aa5.64□□□□□ -1.51
DEF1YKL054C CIN8P27895 1000 aa5.64□□□□□ -1.51
DEF1YKL054C MRPL10P36520 322 aa5.64□□□□□ -1.51
DEF1YKL054C BNA4P38169 460 aa5.64□□□□□ -1.51
DEF1YKL054C RTC2P38279 296 aa5.64□□□□□ -1.51
DEF1YKL054C INM1P38710 295 aa5.64□□□□□ -1.51
DEF1YKL054C GLG2P47011 380 aa5.64□□□□□ -1.51
DEF1YKL054C CUS2P53830 285 aaPredicted RBP5.64□□□□□ -1.51
DEF1YKL054C NOP13P53883 403 aaKnown RBP RIP-Chip data5.64□□□□□ -1.51not detected
DEF1YKL054C MUK1Q02866 612 aa5.64□□□□□ -1.51
DEF1YKL054C PLM2Q04383 521 aa5.64□□□□□ -1.51
DEF1YKL054C EMI2Q04409 500 aaKnown RBP5.64□□□□□ -1.51
DEF1YKL054C GIM5Q04493 163 aa5.64□□□□□ -1.51
DEF1YKL054C YDL057WQ07379 328 aa5.64□□□□□ -1.51
DEF1YKL054C TIP41Q12199 356 aa5.64□□□□□ -1.51
DEF1YKL054C UBA3Q99344 299 aa5.64□□□□□ -1.51
DEF1YKL054C RAD3P06839 778 aa5.63□□□□□ -1.51
DEF1YKL054C GPI12P23797 304 aa5.63□□□□□ -1.51
DEF1YKL054C SHP1P34223 423 aa5.63□□□□□ -1.51
DEF1YKL054C KDX1P36005 433 aa5.63□□□□□ -1.51
DEF1YKL054C UBA4P38820 440 aa5.63□□□□□ -1.51
DEF1YKL054C NMA2P53204 395 aa5.63□□□□□ -1.51
DEF1YKL054C SPP2Q02521 185 aa5.63□□□□□ -1.51
DEF1YKL054C BTS1Q12051 335 aa5.63□□□□□ -1.51
DEF1YKL054C RPL12AP0CX53 165 aaKnown RBP5.63□□□□□ -1.51
DEF1YKL054C RPL12BP0CX54 165 aa5.63□□□□□ -1.51
DEF1YKL054C STE11P23561 717 aa5.63□□□□□ -1.51
DEF1YKL054C DEG1P31115 442 aaKnown RBP5.63□□□□□ -1.51
DEF1YKL054C MSS51P32335 436 aa5.63□□□□□ -1.51
DEF1YKL054C ATP11P32453 318 aa5.63□□□□□ -1.51
DEF1YKL054C DBP8P38719 431 aa5.63□□□□□ -1.51
DEF1YKL054C LAS21P40367 830 aa5.63□□□□□ -1.51
DEF1YKL054C IZH1Q03419 316 aa5.63□□□□□ -1.51
DEF1YKL054C USV1Q12132 391 aa5.63□□□□□ -1.51
DEF1YKL054C CMC2Q3E7A4 109 aa5.63□□□□□ -1.51
DEF1YKL054C ADH2P00331 348 aaKnown RBP5.62□□□□□ -1.51
DEF1YKL054C TRP4P07285 380 aaPredicted RBP5.62□□□□□ -1.51
DEF1YKL054C PTR2P32901 601 aa5.62□□□□□ -1.51
DEF1YKL054C MSN2P33748 704 aa5.62□□□□□ -1.51
DEF1YKL054C YKL162CP36052 402 aa5.62□□□□□ -1.51
DEF1YKL054C YPK3P38070 525 aa5.62□□□□□ -1.51
DEF1YKL054C SMF2P38778 549 aa5.62□□□□□ -1.51
DEF1YKL054C YJL163CP46996 555 aa5.62□□□□□ -1.51
DEF1YKL054C UBP8P50102 471 aa5.62□□□□□ -1.51
DEF1YKL054C ZPR1P53303 486 aaKnown RBP5.62□□□□□ -1.51
DEF1YKL054C YPR003CP53394 754 aa5.62□□□□□ -1.51
DEF1YKL054C GRS2Q06817 618 aa5.62□□□□□ -1.51
DEF1YKL054C TLG2Q08144 397 aa5.62□□□□□ -1.51
DEF1YKL054C THP1Q08231 455 aa5.62□□□□□ -1.51
DEF1YKL054C RAD52P06778 471 aaKnown RBP5.62□□□□□ -1.51
DEF1YKL054C ZRC1P20107 442 aa5.62□□□□□ -1.51
DEF1YKL054C MSK1P32048 576 aa5.62□□□□□ -1.51
DEF1YKL054C MTW1P39731 289 aa5.62□□□□□ -1.51
DEF1YKL054C YMR134WP40207 237 aa5.62□□□□□ -1.51
DEF1YKL054C HXT9P40885 567 aa5.62□□□□□ -1.51
DEF1YKL054C KAP114P53067 1004 aa5.62□□□□□ -1.51
DEF1YKL054C RIM8P53179 542 aa5.62□□□□□ -1.51
DEF1YKL054C MRPL22P53881 309 aa5.62□□□□□ -1.51
DEF1YKL054C EAF7P53911 425 aaKnown RBP5.62□□□□□ -1.51
DEF1YKL054C HXT11P54862 567 aa5.62□□□□□ -1.51
DEF1YKL054C NUP53Q03790 475 aa5.62□□□□□ -1.51
DEF1YKL054C PIG1Q06216 648 aa5.62□□□□□ -1.51
DEF1YKL054C RNR3P21672 869 aaKnown RBP5.61□□□□□ -1.51
DEF1YKL054C ADE1P27616 306 aa5.61□□□□□ -1.51
DEF1YKL054C YEL020CP39994 560 aa5.61□□□□□ -1.51
DEF1YKL054C CDC1P40986 491 aa5.61□□□□□ -1.51
DEF1YKL054C YTP1P53584 459 aa5.61□□□□□ -1.51
DEF1YKL054C FMP30Q02883 468 aa5.61□□□□□ -1.51
DEF1YKL054C RIM13Q03792 727 aa5.61□□□□□ -1.51
DEF1YKL054C YDR132CQ03900 495 aa5.61□□□□□ -1.51
DEF1YKL054C SRO7Q12038 1033 aa5.61□□□□□ -1.51
DEF1YKL054C TKL1P23254 680 aaKnown RBP5.6□□□□□ -1.51
DEF1YKL054C PEX3P28795 441 aa5.6□□□□□ -1.51
Retrieved 100 of 5,963 RNA–protein pairs in 100 ms