RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	YFR020W	P43600	232 aa		3.6	□□□□□ -1.83
NUP85	YJR042W	YGL108C	P53139	140 aa		3.6	□□□□□ -1.83
NUP85	YJR042W	YGR067C	P53243	804 aa		3.6	□□□□□ -1.83
NUP85	YJR042W	SAM50	P53969	484 aa		3.6	□□□□□ -1.83
NUP85	YJR042W	SLT2	Q00772	484 aa		3.6	□□□□□ -1.83
NUP85	YJR042W	GFD1	Q04839	188 aa	Known RBP	3.6	□□□□□ -1.83
NUP85	YJR042W	GRE1	Q08969	168 aa		3.6	□□□□□ -1.83
NUP85	YJR042W	MED4	Q12343	284 aa		3.6	□□□□□ -1.83
NUP85	YJR042W	MYO1	P08964	1928 aa		3.6	□□□□□ -1.83
NUP85	YJR042W	ADE5,7	P07244	802 aa	Known RBP	3.59	□□□□□ -1.83
NUP85	YJR042W	CHS1	P08004	1131 aa		3.59	□□□□□ -1.83
NUP85	YJR042W	CDC6	P09119	513 aa		3.59	□□□□□ -1.83
NUP85	YJR042W	IMG1	P25626	169 aa		3.59	□□□□□ -1.83
NUP85	YJR042W	CIN8	P27895	1000 aa		3.59	□□□□□ -1.83
NUP85	YJR042W	GAR1	P28007	205 aa	Known RBP	3.59	□□□□□ -1.83
NUP85	YJR042W	SIN4	P32259	974 aa		3.59	□□□□□ -1.83
NUP85	YJR042W	RIM1	P32445	135 aa	Known RBP	3.59	□□□□□ -1.83
NUP85	YJR042W	PTR2	P32901	601 aa		3.59	□□□□□ -1.83
NUP85	YJR042W	DUG2	P38149	878 aa		3.59	□□□□□ -1.83
NUP85	YJR042W	RTC3	P38804	111 aa	Predicted RBP	3.59	□□□□□ -1.83
NUP85	YJR042W	DPB11	P47027	764 aa	Predicted RBP	3.59	□□□□□ -1.83
NUP85	YJR042W	MRS2	Q01926	470 aa		3.59	□□□□□ -1.83
NUP85	YJR042W	MYO5	Q04439	1219 aa	Known RBP	3.59	□□□□□ -1.83
NUP85	YJR042W	YDL242W	Q07746	117 aa		3.59	□□□□□ -1.83
NUP85	YJR042W	YPR022C	Q12139	1133 aa		3.59	□□□□□ -1.83
NUP85	YJR042W	SPO24	Q3E752	67 aa		3.59	□□□□□ -1.83
NUP85	YJR042W	ADE4	P04046	510 aa	Known RBP	3.59	□□□□□ -1.84
NUP85	YJR042W	NFT1	P0CE68	1218 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	PMI40	P29952	429 aa	Known RBP	3.59	□□□□□ -1.84
NUP85	YJR042W	MEI5	P32489	222 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	ECT1	P33412	323 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	APT2	P36973	181 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	CBR1	P38626	284 aa	Known RBP	3.59	□□□□□ -1.84
NUP85	YJR042W	RPP1	P38786	293 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	END3	P39013	349 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	ECM10	P39987	644 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	YIR042C	P40586	236 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	ATG27	P46989	271 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	YPL062W	Q02781	134 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	PLB2	Q03674	706 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	RSM24	Q03976	319 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	APC4	Q04601	652 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	RTT103	Q05543	409 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	GGA1	Q06336	557 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	YPL216W	Q08964	1102 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	MRH1	Q12117	320 aa	Predicted RBP	3.59	□□□□□ -1.84
NUP85	YJR042W	YOR029W	Q12243	111 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	INP53	Q12271	1107 aa		3.59	□□□□□ -1.84
NUP85	YJR042W	MET3	P08536	511 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	PEP5	P12868	1029 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	KGD2	P19262	463 aa	Predicted RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	SGV1	P23293	657 aa	Known RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	YCR016W	P25617	290 aa	Known RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	KRE2	P27809	442 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	PEX3	P28795	441 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	DEP1	P31385	405 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	MET22	P32179	357 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	AIM26	P32858	118 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	YPK3	P38070	525 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	QDR3	P38227	689 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	ALP1	P38971	573 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	CCT4	P39078	528 aa	Known RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	NDC80	P40460	691 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	RPN11	P43588	306 aa	Known RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	MPS3	P47069	682 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	STE24	P47154	453 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	ASN2	P49090	572 aa	Known RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	PMT5	P52867	743 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	YGL114W	P53134	725 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	VOA1	P53262	265 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	3.58	□□□□□ -1.84	not detected
NUP85	YJR042W	MTQ1	P53944	314 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	RNT1	Q02555	471 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	SKI8	Q02793	397 aa	Predicted RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	YDR541C	Q03049	344 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	GIM5	Q04493	163 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	SML1	Q04964	104 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	YLR283W	Q05867	314 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	RXT3	Q07458	294 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	TPO1	Q07824	586 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	RAX1	Q08760	435 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	YDL176W	Q12027	708 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	RMD5	Q12508	421 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	YKL068W-A	Q3E826	78 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	RPL35A	P0CX84	120 aa	Known RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	RPL35B	P0CX85	120 aa	Known RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	PMR1	P13586	950 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	RPO26	P20435	155 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	VPS1	P21576	704 aa	Known RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	RNR3	P21672	869 aa	Known RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	PDE1	P22434	369 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	SPO11	P23179	398 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	MYO3	P36006	1272 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	GLY1	P37303	387 aa	Known RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	UIP3	P39547	235 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	MTW1	P39731	289 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	YEL020C	P39994	560 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	FMC1	P40491	155 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	SDS3	P40505	327 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	SPG5	P42933	373 aa		3.58	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 19.2 ms