RNA–Protein interactions for RNA: snR55

snR55, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR55, Length 98 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR55	snR55	RIF2	Q06208	395 aa		0.89	□□□□□ -2.27
snR55	snR55	ORT1	Q12375	292 aa		0.89	□□□□□ -2.27
snR55	snR55	APC2	Q12440	853 aa		0.89	□□□□□ -2.27
snR55	snR55	YDL007C-A	Q2V2Q0	85 aa		0.89	□□□□□ -2.27
snR55	snR55	ARG4	P04076	463 aa	Predicted RBP	0.88	□□□□□ -2.27
snR55	snR55	PRR1	P28708	518 aa		0.88	□□□□□ -2.27
snR55	snR55	APE2	P32454	952 aa	Known RBP	0.88	□□□□□ -2.27
snR55	snR55	TOM20	P35180	183 aa		0.88	□□□□□ -2.27
snR55	snR55	RRN3	P36070	627 aa		0.88	□□□□□ -2.27
snR55	snR55	LYS1	P38998	373 aa	RIP-Chip data	0.88	□□□□□ -2.27	not detected
snR55	snR55	PTI1	P39927	425 aa	Predicted RBP	0.88	□□□□□ -2.27
snR55	snR55	YER184C	P39961	794 aa		0.88	□□□□□ -2.27
snR55	snR55	EGT2	P42835	1041 aa		0.88	□□□□□ -2.27
snR55	snR55	ECM27	P47144	725 aa		0.88	□□□□□ -2.27
snR55	snR55	YPL107W	Q02873	248 aa		0.88	□□□□□ -2.27
snR55	snR55	SYF1	Q04048	859 aa	Predicted RBP	0.88	□□□□□ -2.27
snR55	snR55	NOP58	Q12499	511 aa	Known RBP	0.88	□□□□□ -2.27
snR55	snR55	RMD5	Q12508	421 aa		0.88	□□□□□ -2.27
snR55	snR55	RPB5	P20434	215 aa		0.87	□□□□□ -2.27
snR55	snR55	ECT1	P33412	323 aa		0.87	□□□□□ -2.27
snR55	snR55	SBE22	P38814	852 aa		0.87	□□□□□ -2.27
snR55	snR55	WSS1	P38838	269 aa		0.87	□□□□□ -2.27
snR55	snR55	YPS6	P40583	537 aa		0.87	□□□□□ -2.27
snR55	snR55	LYS14	P40971	790 aa		0.87	□□□□□ -2.27
snR55	snR55	TFG2	P41896	400 aa	Predicted RBP	0.87	□□□□□ -2.27
snR55	snR55	YFR057W	P43625	151 aa		0.87	□□□□□ -2.27
snR55	snR55	TAP42	Q04372	366 aa		0.87	□□□□□ -2.27
snR55	snR55	CMS1	Q07897	291 aa	Known RBP	0.87	□□□□□ -2.27
snR55	snR55	SGT1	Q08446	395 aa		0.87	□□□□□ -2.27
snR55	snR55	YBR126W-A	Q8TGU7	68 aa		0.87	□□□□□ -2.27
snR55	snR55	YLR278C	Q05854	1341 aa		0.87	□□□□□ -2.27
snR55	snR55	GAL80	P04387	435 aa		0.86	□□□□□ -2.27
snR55	snR55	ILV5	P06168	395 aa	Known RBP	0.86	□□□□□ -2.27
snR55	snR55	PRP21	P32524	280 aa	Predicted RBP	0.86	□□□□□ -2.27
snR55	snR55	GYP6	P32806	458 aa		0.86	□□□□□ -2.27
snR55	snR55	ANR2	P36090	516 aa	Predicted RBP	0.86	□□□□□ -2.27
snR55	snR55	DUO1	P53168	247 aa	Known RBP	0.86	□□□□□ -2.27
snR55	snR55	DSL1	P53847	754 aa		0.86	□□□□□ -2.27
snR55	snR55	YMR102C	Q03177	834 aa		0.86	□□□□□ -2.27
snR55	snR55	HSP31	Q04432	237 aa		0.86	□□□□□ -2.27
snR55	snR55	BCH1	Q05029	724 aa		0.86	□□□□□ -2.27
snR55	snR55	MCH1	Q07376	486 aa		0.86	□□□□□ -2.27
snR55	snR55	NMD4	Q12129	218 aa		0.86	□□□□□ -2.27
snR55	snR55	AVL9	Q12500	764 aa		0.86	□□□□□ -2.27
snR55	snR55	HIS4	P00815	799 aa	Known RBP	0.85	□□□□□ -2.27
snR55	snR55	PUT4	P15380	627 aa		0.85	□□□□□ -2.27
snR55	snR55	PTH2	P34222	208 aa		0.85	□□□□□ -2.27
snR55	snR55	CHL4	P38907	458 aa		0.85	□□□□□ -2.27
snR55	snR55	FLC2	P39719	783 aa		0.85	□□□□□ -2.27
snR55	snR55	VMA13	P41807	478 aa	Known RBP	0.85	□□□□□ -2.27
snR55	snR55	KTR6	P54070	446 aa		0.85	□□□□□ -2.27
snR55	snR55	HOT1	Q03213	719 aa		0.85	□□□□□ -2.27
snR55	snR55	YJR112W-A	Q3E743	109 aa		0.85	□□□□□ -2.27
snR55	snR55	MRE11	P32829	692 aa		0.84	□□□□□ -2.27
snR55	snR55	NIP100	P33420	868 aa		0.84	□□□□□ -2.27
snR55	snR55	FRT2	P39734	528 aa		0.84	□□□□□ -2.27
snR55	snR55	IES5	P40060	125 aa		0.84	□□□□□ -2.27
snR55	snR55	YIL029C	P40538	142 aa		0.84	□□□□□ -2.27
snR55	snR55	PET130	P47065	347 aa		0.84	□□□□□ -2.27
snR55	snR55	MST27	P53176	234 aa		0.84	□□□□□ -2.27
snR55	snR55	YIF1	P53845	314 aa	Known RBP	0.84	□□□□□ -2.27
snR55	snR55	ECM7	Q06200	448 aa		0.84	□□□□□ -2.27
snR55	snR55	MFG1	Q07684	458 aa		0.84	□□□□□ -2.27
snR55	snR55	YGK3	Q12222	375 aa	Predicted RBP	0.84	□□□□□ -2.27
snR55	snR55	FOL3	Q12676	427 aa	Predicted RBP	0.84	□□□□□ -2.27
snR55	snR55	TPI1	P00942	248 aa	Known RBP	0.83	□□□□□ -2.28
snR55	snR55	RHO2	P06781	192 aa		0.83	□□□□□ -2.28
snR55	snR55	SEC63	P14906	663 aa		0.83	□□□□□ -2.28
snR55	snR55	YGR067C	P53243	804 aa		0.83	□□□□□ -2.28
snR55	snR55	BET5	Q03630	159 aa		0.83	□□□□□ -2.28
snR55	snR55	RTN1	Q04947	295 aa	Known RBP	0.83	□□□□□ -2.28
snR55	snR55	TIR4	Q12218	487 aa	Predicted RBP	0.83	□□□□□ -2.28
snR55	snR55	SNU66	Q12420	587 aa	Predicted RBP	0.83	□□□□□ -2.28
snR55	snR55	BEM2	P39960	2167 aa	Known RBP	0.82	□□□□□ -2.28
snR55	snR55	CDC16	P09798	840 aa		0.82	□□□□□ -2.28
snR55	snR55	SPO12	P17123	173 aa		0.82	□□□□□ -2.28
snR55	snR55	ZRC1	P20107	442 aa		0.82	□□□□□ -2.28
snR55	snR55	SPB1	P25582	841 aa	Predicted RBP	0.82	□□□□□ -2.28
snR55	snR55	AFG1	P32317	509 aa		0.82	□□□□□ -2.28
snR55	snR55	PHA2	P32452	334 aa		0.82	□□□□□ -2.28
snR55	snR55	FHL1	P39521	936 aa		0.82	□□□□□ -2.28
snR55	snR55	SAS2	P40963	338 aa		0.82	□□□□□ -2.28
snR55	snR55	IGD1	P43598	195 aa		0.82	□□□□□ -2.28
snR55	snR55	SFH5	P47008	294 aa		0.82	□□□□□ -2.28
snR55	snR55	SKI7	Q08491	747 aa	Predicted RBP	0.82	□□□□□ -2.28
snR55	snR55	CTR86	P25355	563 aa		0.81	□□□□□ -2.28
snR55	snR55	CBF5	P33322	483 aa	Known RBP RIP-Chip data	0.81	□□□□□ -2.28	not detected
snR55	snR55	HEL1	P36113	551 aa		0.81	□□□□□ -2.28
snR55	snR55	GAT2	P40209	560 aa		0.81	□□□□□ -2.28
snR55	snR55	HMS2	P47175	358 aa		0.81	□□□□□ -2.28
snR55	snR55	YGR149W	P48236	432 aa		0.81	□□□□□ -2.28
snR55	snR55	MRM2	P53123	320 aa		0.81	□□□□□ -2.28
snR55	snR55	RMD9	P53140	646 aa	Known RBP	0.81	□□□□□ -2.28
snR55	snR55	YGR066C	P53242	292 aa		0.81	□□□□□ -2.28
snR55	snR55	SKI8	Q02793	397 aa	Predicted RBP	0.81	□□□□□ -2.28
snR55	snR55	HUA2	Q12134	243 aa		0.81	□□□□□ -2.28
snR55	snR55	SEC39	Q12745	709 aa		0.81	□□□□□ -2.28
snR55	snR55	NAG1	Q8TGN9	163 aa		0.81	□□□□□ -2.28
snR55	snR55	IDH2	P28241	369 aa	Known RBP	0.8	□□□□□ -2.28
snR55	snR55	SIN4	P32259	974 aa		0.8	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 17.3 ms