RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	COA1	P40452	197 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	FET5	P43561	622 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	FAR3	P46671	204 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	ARC1	P46672	376 aa	Known RBP	4.36	□□□□□ -1.71
UBI4	YLL039C	YJL055W	P47044	245 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	AIF1	P52923	378 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	YGR015C	P53208	328 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	SHY1	P53266	389 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	ESF2	P53743	316 aa	Known RBP	4.36	□□□□□ -1.71
UBI4	YLL039C	IBD2	P53892	351 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	HXT15	P54854	567 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	EGD1	Q02642	157 aa	Known RBP	4.36	□□□□□ -1.71
UBI4	YLL039C	FMN1	Q03778	218 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	URC2	Q04411	772 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	YMR111C	Q04461	462 aa	Predicted RBP	4.36	□□□□□ -1.71
UBI4	YLL039C	BCH1	Q05029	724 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	BNA5	Q05979	453 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	SEC10	Q06245	871 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.36	□□□□□ -1.71	not detected
UBI4	YLL039C	PFA4	Q12006	378 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	APC9	Q12107	265 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	NTO1	Q12311	748 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	RKM5	Q12367	367 aa		4.36	□□□□□ -1.71
UBI4	YLL039C	HRP1	Q99383	534 aa	Known RBP	4.36	□□□□□ -1.71
UBI4	YLL039C	STE3	P06783	470 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	SPT3	P06844	337 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	KSS1	P14681	368 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	PRE9	P23638	258 aa	Known RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	CRM1	P30822	1084 aa	Known RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	MGM101	P32787	269 aa	Known RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	SDH3	P33421	198 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	PTH2	P34222	208 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	RRN3	P36070	627 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	NTR2	P36118	322 aa	Predicted RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	YBR062C	P38239	180 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	GIC1	P38785	314 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	SSZ1	P38788	538 aa	Known RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	YHR127W	P38833	243 aa	Known RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	YDR089W	P38966	869 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	EMP65	P40085	556 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	PRM2	P40534	656 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	MRPS18	P42847	217 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	YFR020W	P43600	232 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	TIM54	P47045	478 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	MAD3	P47074	515 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	YJR149W	P47177	404 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	HXT16	P47185	567 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	GNP1	P48813	663 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	MDM34	P53083	459 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	EFM5	P53200	248 aa	Known RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	RHO3	Q00245	231 aa	Known RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	AAT1	Q01802	451 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	ATP25	Q03153	612 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	YDR239C	Q03780	787 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	YAP6	Q03935	383 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	CTK1	Q03957	528 aa	Known RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	YDR179W-A	Q03983	463 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	YMR034C	Q05131	434 aa	Predicted RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	RIF2	Q06208	395 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	EAF1	Q06337	982 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	SYO1	Q07395	620 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	ENT4	Q07872	247 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	YLR031W	Q07978	186 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	TMA46	Q12000	345 aa	Known RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	SUL2	Q12325	893 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	RRP36	Q12481	300 aa	Predicted RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	HTZ1	Q12692	134 aa	Known RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	LSO2	Q3E772	92 aa	Known RBP	4.35	□□□□□ -1.71
UBI4	YLL039C	YPT6	Q99260	215 aa		4.35	□□□□□ -1.71
UBI4	YLL039C	IRA1	P18963	3092 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	RHO2	P06781	192 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	GUK1	P15454	187 aa	Known RBP	4.34	□□□□□ -1.71
UBI4	YLL039C	ART10	P18634	518 aa	Known RBP	4.34	□□□□□ -1.71
UBI4	YLL039C	EXO70	P19658	623 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	PRI2	P20457	528 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	BAS1	P22035	811 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	ZIP1	P31111	875 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	PET309	P32522	965 aa	Predicted RBP	4.34	□□□□□ -1.71
UBI4	YLL039C	ATO2	P32907	282 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	ARA1	P38115	344 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	RFC3	P38629	340 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	YHR033W	P38690	423 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	INM1	P38710	295 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	GOS1	P38736	223 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	PEX18	P38855	283 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	SWP82	P43554	623 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	IRC5	P43610	853 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	YJR030C	P47101	745 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	PHO23	P50947	330 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	COS12	P53053	380 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	SGF73	P53165	657 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	PBP1	P53297	722 aa	Known RBP	4.34	□□□□□ -1.71
UBI4	YLL039C	SLM2	P53955	656 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	LSM3	P57743	89 aa	Known RBP	4.34	□□□□□ -1.71
UBI4	YLL039C	RPM2	Q02773	1202 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	NAN1	Q02931	896 aa	Known RBP	4.34	□□□□□ -1.71
UBI4	YLL039C	GAS3	Q03655	524 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	VHS1	Q03785	461 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	SIZ1	Q04195	904 aa		4.34	□□□□□ -1.71
UBI4	YLL039C	YLR224W	Q05947	369 aa		4.34	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 30.7 ms