RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 PCDHA8Q9Y5H6 950 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 NLRC5Q86WI3 1866 aa12.27□□□□□ -0.45
VRK3-214ENST00000598553 LCHNA4D1U4 455 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 RFXAPO00287 272 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 TREHO43280 583 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 ZBTB43O43298 467 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 FIBPO43427 364 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 SMIM10L2AP0DMW4 78 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 SMIM10L2BP0DMW5 78 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 CALM1P0DP23 149 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 CALM2P0DP24 149 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 CALM3P0DP25 149 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 FOSL2P15408 326 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 HOXC8P31273 242 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 GNAQP50148 359 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 RBL2Q08999 1139 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 TRAF1Q13077 416 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 ZNF618Q5T7W0 954 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 UTP14CQ5TAP6 766 aaKnown RBP12.26□□□□□ -0.45
VRK3-214ENST00000598553 RNF20Q5VTR2 975 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 LRRC8DQ7L1W4 858 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 TMTC2Q8N394 836 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 BRF1Q92994 677 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 UIMC1Q96RL1 719 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 LARP6Q9BRS8 491 aaKnown RBP12.26□□□□□ -0.45
VRK3-214ENST00000598553 PSTPIP2Q9H939 334 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 MLXIPQ9HAP2 919 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 NOD1Q9Y239 953 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 UBIAD1Q9Y5Z9 338 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 V9GY48 417 aaPredicted RBP12.26□□□□□ -0.45
VRK3-214ENST00000598553 EVPLQ92817 2033 aa12.26□□□□□ -0.45
VRK3-214ENST00000598553 KIAA1671Q9BY89 1806 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 TMEM265A0A087WTH1 108 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 GSTTP1A0A1W2PQM5 241 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 PPFIA4O75335 1185 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 SELPP16109 830 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 PKN1Q16512 942 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 KRT40Q6A162 431 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 METTL7BQ6UX53 244 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 C7orf31Q8N865 590 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 CUL5Q93034 780 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 PCYT2Q99447 389 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 RNPEPQ9H4A4 650 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 CERS4Q9HA82 394 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 SETD4Q9NVD3 440 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 NAP1L2Q9ULW6 460 aaPredicted RBP12.25□□□□□ -0.45
VRK3-214ENST00000598553 SLC4A7Q9Y6M7 1214 aa12.25□□□□□ -0.45
VRK3-214ENST00000598553 MYH9P35579 1960 aaKnown RBP12.25□□□□□ -0.45
VRK3-214ENST00000598553 TCF20Q9UGU0 1960 aaKnown RBP12.25□□□□□ -0.45
VRK3-214ENST00000598553 H3BRB1 525 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 EDIL3O43854 480 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 CA3P07451 260 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 CTSHP09668 335 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 ARP10275 920 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 TGFB3P10600 412 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 ATP2A2P16615 1042 aaKnown RBP12.24□□□□□ -0.45
VRK3-214ENST00000598553 RPS6KB1P23443 525 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 CLK2P49760 499 aaKnown RBP12.24□□□□□ -0.45
VRK3-214ENST00000598553 NAPAP54920 295 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 ADAM17P78536 824 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 MKRN4PQ13434 485 aaPredicted RBP12.24□□□□□ -0.45
VRK3-214ENST00000598553 BFSP2Q13515 415 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 COL4A6Q14031 1691 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 TOB2Q14106 344 aaPredicted RBP12.24□□□□□ -0.45
VRK3-214ENST00000598553 NID2Q14112 1375 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 KCNV1Q6PIU1 500 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 SERINC5Q86VE9 423 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.24□□□□□ -0.45
VRK3-214ENST00000598553 RPUSD2Q8IZ73 545 aaKnown RBP12.24□□□□□ -0.45
VRK3-214ENST00000598553 RETREG2Q8NC44 543 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 CAGE1Q8TC20 777 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 RASGRP4Q8TDF6 673 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 AFAP1L1Q8TED9 768 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 PHKBQ93100 1093 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 KATNAL1Q9BW62 490 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 ANO3Q9BYT9 981 aa12.24□□□□□ -0.45
VRK3-214ENST00000598553 FTOQ9C0B1 505 aaKnown RBP eCLIP12.24□□□□□ -0.45
VRK3-214ENST00000598553 TUT1Q9H6E5 874 aaKnown RBP12.24□□□□□ -0.45
VRK3-214ENST00000598553 NCOA5Q9HCD5 579 aaKnown RBP12.24□□□□□ -0.45
VRK3-214ENST00000598553 PRRC2BQ5JSZ5 2229 aaKnown RBP12.23□□□□□ -0.45
VRK3-214ENST00000598553 CHD9Q3L8U1 2897 aa12.23□□□□□ -0.45
VRK3-214ENST00000598553 CXCL10P02778 98 aa12.23□□□□□ -0.45
VRK3-214ENST00000598553 MARK3P27448 753 aa12.23□□□□□ -0.45
VRK3-214ENST00000598553 TCF7P36402 384 aaPredicted RBP12.23□□□□□ -0.45
VRK3-214ENST00000598553 WDR5P61964 334 aaKnown RBP12.23□□□□□ -0.45
VRK3-214ENST00000598553 PTK7Q13308 1070 aa12.23□□□□□ -0.45
VRK3-214ENST00000598553 NTRK3Q16288 839 aa12.23□□□□□ -0.45
VRK3-214ENST00000598553 GNPTABQ3T906 1256 aa12.23□□□□□ -0.45
VRK3-214ENST00000598553 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.23□□□□□ -0.45
VRK3-214ENST00000598553 RUFY4Q6ZNE9 571 aa12.23□□□□□ -0.45
VRK3-214ENST00000598553 LMBR1Q8WVP7 490 aa12.23□□□□□ -0.45
VRK3-214ENST00000598553 COL25A1Q9BXS0 654 aaPredicted RBP12.23□□□□□ -0.45
VRK3-214ENST00000598553 AGXT2Q9BYV1 514 aa12.23□□□□□ -0.45
VRK3-214ENST00000598553 RIC8AQ9NPQ8 531 aa12.23□□□□□ -0.45
VRK3-214ENST00000598553 JADE2Q9NQC1 790 aa12.23□□□□□ -0.45
VRK3-214ENST00000598553 RBM28Q9NW13 759 aaKnown RBP12.23□□□□□ -0.45
VRK3-214ENST00000598553 CHD7Q9P2D1 2997 aa12.23□□□□□ -0.45
VRK3-214ENST00000598553 C17orf102A2RUQ5 167 aa12.22□□□□□ -0.45
VRK3-214ENST00000598553 DLL1O00548 723 aa12.22□□□□□ -0.45
VRK3-214ENST00000598553 NOP56O00567 594 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms