RNA–Protein interactions for RNA: snR49

snR49, Transcript of H/ACA box small nucleolar RNA (snoRNA), yeast

Gene snR49, Length 165 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR49	snR49	YRM1	Q12340	786 aa		1.03	□□□□□ -2.24
snR49	snR49	SSM4	P40318	1319 aa		1.03	□□□□□ -2.24
snR49	snR49	RAV1	P47104	1357 aa		1.03	□□□□□ -2.24
snR49	snR49	MDE1	P47095	244 aa		1.02	□□□□□ -2.25
snR49	snR49	IMD4	P50094	524 aa	Known RBP	1.02	□□□□□ -2.25
snR49	snR49	GTR1	Q00582	310 aa		1.02	□□□□□ -2.25
snR49	snR49	SOV1	Q04748	898 aa		1.02	□□□□□ -2.25
snR49	snR49	SPO7	P18410	259 aa		1.01	□□□□□ -2.25
snR49	snR49	AAT2	P23542	418 aa	Known RBP	1.01	□□□□□ -2.25
snR49	snR49	DPH2	P32461	534 aa		1.01	□□□□□ -2.25
snR49	snR49	MUM2	P38236	366 aa		1.01	□□□□□ -2.25
snR49	snR49	BAT1	P38891	393 aa	Known RBP	1.01	□□□□□ -2.25
snR49	snR49	CAF130	P53280	1122 aa	Predicted RBP	1.01	□□□□□ -2.25
snR49	snR49	PIN3	Q06449	215 aa		1.01	□□□□□ -2.25
snR49	snR49	NDE2	Q07500	545 aa		1.01	□□□□□ -2.25
snR49	snR49	CTI6	Q08923	506 aa		1.01	□□□□□ -2.25
snR49	snR49	TOP1	P04786	769 aa		1	□□□□□ -2.25
snR49	snR49	TPS2	P31688	896 aa	Known RBP	1	□□□□□ -2.25
snR49	snR49	PRY2	P36110	329 aa		1	□□□□□ -2.25
snR49	snR49	CBP4	P37267	147 aa		1	□□□□□ -2.25
snR49	snR49	ALD5	P40047	520 aa	Known RBP	1	□□□□□ -2.25
snR49	snR49	OCA1	P50946	238 aa	Predicted RBP	1	□□□□□ -2.25
snR49	snR49	YPS5	P53057	165 aa		1	□□□□□ -2.25
snR49	snR49	YPR195C	Q06594	109 aa		1	□□□□□ -2.25
snR49	snR49	RLM1	Q12224	676 aa		1	□□□□□ -2.25
snR49	snR49	JID1	Q12350	301 aa		1	□□□□□ -2.25
snR49	snR49	SKM1	Q12469	655 aa		1	□□□□□ -2.25
snR49	snR49	FUM1	P08417	488 aa	Known RBP	0.99	□□□□□ -2.25
snR49	snR49	RPL19A	P0CX82	189 aa	Known RBP	0.99	□□□□□ -2.25
snR49	snR49	RPL19B	P0CX83	189 aa	Predicted RBP	0.99	□□□□□ -2.25
snR49	snR49	NAM2	P11325	894 aa		0.99	□□□□□ -2.25
snR49	snR49	PEP3	P27801	918 aa		0.99	□□□□□ -2.25
snR49	snR49	PTK1	P36002	662 aa	Predicted RBP	0.99	□□□□□ -2.25
snR49	snR49	TCD2	P36101	447 aa	Known RBP	0.99	□□□□□ -2.25
snR49	snR49	OXA1	P39952	402 aa		0.99	□□□□□ -2.25
snR49	snR49	KAP123	P40069	1113 aa	Known RBP	0.99	□□□□□ -2.25
snR49	snR49	SEC9	P40357	651 aa		0.99	□□□□□ -2.25
snR49	snR49	UPF3	P48412	387 aa	Known RBP	0.99	□□□□□ -2.25
snR49	snR49	VID30	P53076	958 aa		0.99	□□□□□ -2.25
snR49	snR49	ARE2	P53629	642 aa	Known RBP	0.99	□□□□□ -2.25
snR49	snR49	YNR048W	P53740	393 aa		0.99	□□□□□ -2.25
snR49	snR49	FRE4	P53746	719 aa		0.99	□□□□□ -2.25
snR49	snR49	YPT6	Q99260	215 aa		0.99	□□□□□ -2.25
snR49	snR49	TEF1	P02994	458 aa	Known RBP	0.98	□□□□□ -2.25
snR49	snR49	RPI1	P23250	407 aa	Known RBP	0.98	□□□□□ -2.25
snR49	snR49	PRD1	P25375	712 aa		0.98	□□□□□ -2.25
snR49	snR49	YME2	P32843	850 aa		0.98	□□□□□ -2.25
snR49	snR49	OM14	P38325	134 aa		0.98	□□□□□ -2.25
snR49	snR49	DPH1	P40487	425 aa	Known RBP	0.98	□□□□□ -2.25
snR49	snR49	SAP185	P40856	1058 aa		0.98	□□□□□ -2.25
snR49	snR49	YGL262W	P53054	175 aa		0.98	□□□□□ -2.25
snR49	snR49	TPS1	Q00764	495 aa	Known RBP	0.98	□□□□□ -2.25
snR49	snR49	YEH1	Q07804	573 aa		0.98	□□□□□ -2.25
snR49	snR49	SLF1	Q12034	447 aa	Known RBP	0.98	□□□□□ -2.25
snR49	snR49	RTP1	Q12751	981 aa		0.98	□□□□□ -2.25
snR49	snR49	ATP10	P18496	279 aa		0.97	□□□□□ -2.25
snR49	snR49	OLE1	P21147	510 aa	Known RBP	0.97	□□□□□ -2.25
snR49	snR49	ECM25	P32525	599 aa		0.97	□□□□□ -2.25
snR49	snR49	THI2	P38141	450 aa		0.97	□□□□□ -2.25
snR49	snR49	YBL029W	P38201	376 aa		0.97	□□□□□ -2.25
snR49	snR49	SGN1	P40561	250 aa	Known RBP RIP-Chip data	0.97	□□□□□ -2.25	not detected
snR49	snR49	YFL012W	P43580	148 aa		0.97	□□□□□ -2.25
snR49	snR49	BIR1	P47134	954 aa		0.97	□□□□□ -2.25
snR49	snR49	YIP5	P53108	310 aa		0.97	□□□□□ -2.25
snR49	snR49	YGR021W	P53212	290 aa		0.97	□□□□□ -2.25
snR49	snR49	NCS2	P53923	493 aa	Predicted RBP	0.97	□□□□□ -2.25
snR49	snR49	MTQ1	P53944	314 aa		0.97	□□□□□ -2.25
snR49	snR49	YPL107W	Q02873	248 aa		0.97	□□□□□ -2.25
snR49	snR49	YET2	Q04210	160 aa		0.97	□□□□□ -2.25
snR49	snR49	SMF3	Q12078	473 aa	Predicted RBP	0.97	□□□□□ -2.25
snR49	snR49	RPL31B	P0C2H9	113 aa	Known RBP	0.96	□□□□□ -2.26
snR49	snR49	PRR1	P28708	518 aa		0.96	□□□□□ -2.26
snR49	snR49	GPI18	P38211	433 aa		0.96	□□□□□ -2.26
snR49	snR49	JLP2	P40206	208 aa		0.96	□□□□□ -2.26
snR49	snR49	KTR5	P53966	522 aa	Predicted RBP	0.96	□□□□□ -2.26
snR49	snR49	NGL3	Q03210	505 aa		0.96	□□□□□ -2.26
snR49	snR49	FIN1	Q03898	291 aa		0.96	□□□□□ -2.26
snR49	snR49	APC2	Q12440	853 aa		0.96	□□□□□ -2.26
snR49	snR49	ARG4	P04076	463 aa	Predicted RBP	0.95	□□□□□ -2.26
snR49	snR49	MSI1	P13712	422 aa		0.95	□□□□□ -2.26
snR49	snR49	CDC50	P25656	391 aa		0.95	□□□□□ -2.26
snR49	snR49	CHS3	P29465	1165 aa		0.95	□□□□□ -2.26
snR49	snR49	ZUO1	P32527	433 aa	Known RBP	0.95	□□□□□ -2.26
snR49	snR49	CYM1	P32898	989 aa		0.95	□□□□□ -2.26
snR49	snR49	TOM20	P35180	183 aa		0.95	□□□□□ -2.26
snR49	snR49	MRPL27	P36526	146 aa	Predicted RBP	0.95	□□□□□ -2.26
snR49	snR49	PFF1	P38244	976 aa		0.95	□□□□□ -2.26
snR49	snR49	STP2	P38704	541 aa		0.95	□□□□□ -2.26
snR49	snR49	LYS1	P38998	373 aa	RIP-Chip data	0.95	□□□□□ -2.26	not detected
snR49	snR49	YER184C	P39961	794 aa		0.95	□□□□□ -2.26
snR49	snR49	YFR057W	P43625	151 aa		0.95	□□□□□ -2.26
snR49	snR49	ECM27	P47144	725 aa		0.95	□□□□□ -2.26
snR49	snR49	BNS1	P50084	137 aa		0.95	□□□□□ -2.26
snR49	snR49	RPN14	P53196	417 aa		0.95	□□□□□ -2.26
snR49	snR49	RHO5	P53879	331 aa	Known RBP	0.95	□□□□□ -2.26
snR49	snR49	NUP116	Q02630	1113 aa		0.95	□□□□□ -2.26
snR49	snR49	YDR387C	Q04162	555 aa		0.95	□□□□□ -2.26
snR49	snR49	TY1B-A	O13527	1196 aa	Known RBP	0.94	□□□□□ -2.26
snR49	snR49	RPB5	P20434	215 aa		0.94	□□□□□ -2.26
snR49	snR49	RAD57	P25301	460 aa		0.94	□□□□□ -2.26

Retrieved 100 of 5,963 RNA–protein pairs in 22.7 ms