RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	MMS4	P38257	691 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YBR138C	P38277	524 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	COX14	P39103	70 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	MST28	P39552	234 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	RPH1	P39956	796 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	EAF5	P39995	279 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YNL195C	P40168	261 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	MNP1	P53163	194 aa	Predicted RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	TDA7	P53882	636 aa	Predicted RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	SLG1	P54867	378 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	RPT6	Q01939	405 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	GYL1	Q04322	720 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	RRP9	Q06506	573 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	ECM30	Q06673	1274 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YFH1	Q07540	174 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	THP1	Q08231	455 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	TIM18	Q08749	192 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	PDH1	Q12428	516 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	RRD2	Q12461	358 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	CSR2	Q12734	1121 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	Q0010	Q9ZZX9	128 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	UFD4	P33202	1483 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	URB1	P34241	1764 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	SPO7	P18410	259 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	SGV1	P23293	657 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	POL4	P25615	582 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	NDI1	P32340	513 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	HXT1	P32465	570 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	RPN12	P32496	274 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	SPR1	P32603	445 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	WBP1	P33767	430 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	PXA2	P34230	853 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	BUR6	P40096	142 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YMR134W	P40207	237 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YGR016W	P53209	190 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	NUP100	Q02629	959 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YML119W	Q03208	357 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YDL121C	Q07541	149 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	TEN1	Q07921	160 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	DAP1	Q12091	152 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YPT6	Q99260	215 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	HAP1	P0CE41	1502 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	PEP4	P07267	405 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	RIP1	P08067	215 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	NAT1	P12945	854 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	APE1	P14904	514 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	SRV2	P17555	526 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	YCR043C	P25361	127 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	PGS1	P25578	521 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	TIP1	P27654	210 aa	Predicted RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	IDH2	P28241	369 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	LDS1	P31379	325 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	KTR3	P38130	404 aa	Predicted RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	IMD2	P38697	523 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	RBG1	P39729	369 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YND1	P40009	630 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	SHO1	P40073	367 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	PAC11	P40960	533 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	LYS14	P40971	790 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	IMD3	P50095	523 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	LGE1	Q02796	332 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	YPL107W	Q02873	248 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	SLD5	Q03406	294 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	DPB4	Q04603	196 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	YDL218W	Q07629	317 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	TLG2	Q08144	397 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	FRE3	Q08905	711 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YPL199C	Q08954	240 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	AEP3	Q12089	606 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	ERV2	Q12284	196 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	COX17	Q12287	69 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	SET6	Q12529	373 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	MET5	P47169	1442 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	RPL31B	P0C2H9	113 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	BAR1	P12630	587 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	SAN1	P22470	610 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	DPH2	P32461	534 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	ECM25	P32525	599 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YEF1	P32622	495 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	GCG1	P32656	232 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	SLX1	P38324	304 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	LYS1	P38998	373 aa	RIP-Chip data	0.85	□□□□□ -2.27	not detected
RKR1	YMR247C	YGL138C	P53122	345 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	SMM1	P53720	384 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	VPS75	P53853	264 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	KTR6	P54070	446 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	REG1	Q00816	1014 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YDR541C	Q03049	344 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YML037C	Q03703	340 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YML053C	Q04978	212 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	YLR287C	Q05881	355 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	APC5	Q08683	685 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	RAX1	Q08760	435 aa		0.85	□□□□□ -2.27
RKR1	YMR247C	RTC5	Q12108	567 aa	Known RBP	0.85	□□□□□ -2.27
RKR1	YMR247C	BUD3	P25558	1636 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	SNF3	P10870	884 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	AMD1	P15274	810 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	PDX1	P16451	410 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	CKA2	P19454	339 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	YIM1	P28625	365 aa		0.84	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms