RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C PHO86P46956 311 aa2.19□□□□□ -2.06
UBP11YKR098C MDE1P47095 244 aa2.19□□□□□ -2.06
UBP11YKR098C TDA7P53882 636 aaPredicted RBP2.19□□□□□ -2.06
UBP11YKR098C RPN9Q04062 393 aaKnown RBP2.19□□□□□ -2.06
UBP11YKR098C MRPL1Q04599 285 aa2.19□□□□□ -2.06
UBP11YKR098C YMR254CQ04838 102 aa2.19□□□□□ -2.06
UBP11YKR098C DBP9Q06218 594 aaKnown RBP2.19□□□□□ -2.06
UBP11YKR098C NDL1Q06568 189 aa2.19□□□□□ -2.06
UBP11YKR098C SYO1Q07395 620 aa2.19□□□□□ -2.06
UBP11YKR098C NRT1Q08485 598 aa2.19□□□□□ -2.06
UBP11YKR098C ALG1P16661 449 aa2.18□□□□□ -2.06
UBP11YKR098C TRX1P22217 103 aaKnown RBP2.18□□□□□ -2.06
UBP11YKR098C PHO84P25297 587 aaKnown RBP2.18□□□□□ -2.06
UBP11YKR098C MIC60P36112 540 aa2.18□□□□□ -2.06
UBP11YKR098C MRPL4P36517 319 aa2.18□□□□□ -2.06
UBP11YKR098C RRP4P38792 359 aaKnown RBP2.18□□□□□ -2.06
UBP11YKR098C WSS1P38838 269 aa2.18□□□□□ -2.06
UBP11YKR098C STN1P38960 494 aa2.18□□□□□ -2.06
UBP11YKR098C VPS52P39904 641 aa2.18□□□□□ -2.06
UBP11YKR098C YIF1P53845 314 aaKnown RBP2.18□□□□□ -2.06
UBP11YKR098C DSL1P53847 754 aa2.18□□□□□ -2.06
UBP11YKR098C RBA50Q04418 439 aa2.18□□□□□ -2.06
UBP11YKR098C PML1Q07930 204 aaPredicted RBP2.18□□□□□ -2.06
UBP11YKR098C PSY3Q12318 242 aa2.18□□□□□ -2.06
UBP11YKR098C CYB2P00175 591 aa2.17□□□□□ -2.06
UBP11YKR098C SEC62P21825 274 aa2.17□□□□□ -2.06
UBP11YKR098C RPI1P23250 407 aaKnown RBP2.17□□□□□ -2.06
UBP11YKR098C ERG1P32476 496 aaKnown RBP2.17□□□□□ -2.06
UBP11YKR098C SMI1P32566 505 aa2.17□□□□□ -2.06
UBP11YKR098C GDT1P38301 280 aaPredicted RBP2.17□□□□□ -2.06
UBP11YKR098C YTA12P40341 825 aa2.17□□□□□ -2.06
UBP11YKR098C YIR016WP40572 265 aa2.17□□□□□ -2.06
UBP11YKR098C MDV1P47025 714 aa2.17□□□□□ -2.06
UBP11YKR098C SEC5P89102 971 aa2.17□□□□□ -2.06
UBP11YKR098C RLI1Q03195 608 aaKnown RBP2.17□□□□□ -2.06
UBP11YKR098C MRPL51Q06090 140 aaPredicted RBP2.17□□□□□ -2.06
UBP11YKR098C MLH2Q07980 695 aa2.17□□□□□ -2.06
UBP11YKR098C LSP1Q12230 341 aaKnown RBP2.17□□□□□ -2.06
UBP11YKR098C YDR061WQ12298 539 aa2.17□□□□□ -2.06
UBP11YKR098C PDE2P06776 526 aa2.17□□□□□ -2.06
UBP11YKR098C FAA1P30624 700 aaKnown RBP2.17□□□□□ -2.06
UBP11YKR098C SMY1P32364 656 aaKnown RBP2.17□□□□□ -2.06
UBP11YKR098C APE2P32454 952 aaKnown RBP2.17□□□□□ -2.06
UBP11YKR098C ECM25P32525 599 aa2.17□□□□□ -2.06
UBP11YKR098C ISC1P40015 477 aaKnown RBP2.17□□□□□ -2.06
UBP11YKR098C GAT2P40209 560 aa2.17□□□□□ -2.06
UBP11YKR098C YIL152WP40455 235 aa2.17□□□□□ -2.06
UBP11YKR098C YPS6P40583 537 aa2.17□□□□□ -2.06
UBP11YKR098C CHS6P40955 746 aa2.17□□□□□ -2.06
UBP11YKR098C EPL1P43572 832 aa2.17□□□□□ -2.06
UBP11YKR098C PCP1P53259 346 aa2.17□□□□□ -2.06
UBP11YKR098C STP1Q00947 519 aa2.17□□□□□ -2.06
UBP11YKR098C IRC15Q02733 499 aa2.17□□□□□ -2.06
UBP11YKR098C YEH2Q07950 538 aa2.17□□□□□ -2.06
UBP11YKR098C REX3Q12090 404 aa2.17□□□□□ -2.06
UBP11YKR098C BUG1Q12191 341 aa2.17□□□□□ -2.06
UBP11YKR098C YDL009CQ12210 107 aa2.17□□□□□ -2.06
UBP11YKR098C UBX3Q12229 455 aa2.17□□□□□ -2.06
UBP11YKR098C TFB5Q3E7C1 72 aaPredicted RBP2.17□□□□□ -2.06
UBP11YKR098C EXO70P19658 623 aa2.16□□□□□ -2.06
UBP11YKR098C CTR86P25355 563 aa2.16□□□□□ -2.06
UBP11YKR098C YEL043WP32618 956 aa2.16□□□□□ -2.06
UBP11YKR098C SIP2P34164 415 aaKnown RBP2.16□□□□□ -2.06
UBP11YKR098C FRE2P36033 711 aa2.16□□□□□ -2.06
UBP11YKR098C OLA1P38219 394 aaKnown RBP2.16□□□□□ -2.06
UBP11YKR098C GPI16P38875 610 aa2.16□□□□□ -2.06
UBP11YKR098C PCI8P40512 444 aa2.16□□□□□ -2.06
UBP11YKR098C YIR014WP40570 242 aa2.16□□□□□ -2.06
UBP11YKR098C AZF1P41696 914 aa2.16□□□□□ -2.06
UBP11YKR098C ROG1P53118 685 aa2.16□□□□□ -2.06
UBP11YKR098C YGL082WP53155 381 aa2.16□□□□□ -2.06
UBP11YKR098C GIP3Q03016 1276 aa2.16□□□□□ -2.06
UBP11YKR098C TAF12Q03761 539 aa2.16□□□□□ -2.06
UBP11YKR098C YDR415CQ04033 374 aaPredicted RBP2.16□□□□□ -2.06
UBP11YKR098C SNT309Q06091 175 aaPredicted RBP2.16□□□□□ -2.06
UBP11YKR098C YFH1Q07540 174 aa2.16□□□□□ -2.06
UBP11YKR098C HIS4P00815 799 aaKnown RBP2.16□□□□□ -2.06
UBP11YKR098C STF1P01098 86 aa2.16□□□□□ -2.06
UBP11YKR098C ILV5P06168 395 aaKnown RBP2.16□□□□□ -2.06
UBP11YKR098C GLN3P18494 730 aa2.16□□□□□ -2.06
UBP11YKR098C HNM1P19807 563 aa2.16□□□□□ -2.06
UBP11YKR098C UBA1P22515 1024 aaKnown RBP2.16□□□□□ -2.06
UBP11YKR098C YNK1P36010 153 aaKnown RBP2.16□□□□□ -2.06
UBP11YKR098C PES4P39684 611 aa2.16□□□□□ -2.06
UBP11YKR098C YIP1P53039 248 aa2.16□□□□□ -2.06
UBP11YKR098C PIB2P53191 635 aa2.16□□□□□ -2.06
UBP11YKR098C PDR16P53860 351 aaKnown RBP2.16□□□□□ -2.06
UBP11YKR098C GPI15P53961 229 aa2.16□□□□□ -2.06
UBP11YKR098C PNG1Q02890 363 aa2.16□□□□□ -2.06
UBP11YKR098C YDR541CQ03049 344 aa2.16□□□□□ -2.06
UBP11YKR098C DSE3Q08729 430 aa2.16□□□□□ -2.06
UBP11YKR098C HIF1Q12373 385 aa2.16□□□□□ -2.06
UBP11YKR098C NFT1P0CE68 1218 aa2.15□□□□□ -2.07
UBP11YKR098C PTP1P25044 335 aa2.15□□□□□ -2.07
UBP11YKR098C PHO91P27514 894 aa2.15□□□□□ -2.07
UBP11YKR098C HSP104P31539 908 aaKnown RBP2.15□□□□□ -2.07
UBP11YKR098C ASK1P35734 292 aa2.15□□□□□ -2.07
UBP11YKR098C STP2P38704 541 aa2.15□□□□□ -2.07
UBP11YKR098C RRP3P38712 501 aaKnown RBP2.15□□□□□ -2.07
UBP11YKR098C SPC97P38863 823 aa2.15□□□□□ -2.07
Retrieved 100 of 5,963 RNA–protein pairs in 40.5 ms