RNA–Protein interactions for RNA: YIL040W

APQ12, Transcript of Protein required for nuclear envelope morphology, yeast

Gene APQ12, Length 417 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
APQ12	YIL040W	MSR1	P38714	643 aa		0.76	□□□□□ -2.29
APQ12	YIL040W	CAF130	P53280	1122 aa	Predicted RBP	0.76	□□□□□ -2.29
APQ12	YIL040W	RAD30	Q04049	632 aa		0.76	□□□□□ -2.29
APQ12	YIL040W	MFB1	Q04922	465 aa		0.76	□□□□□ -2.29
APQ12	YIL040W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	0.76	□□□□□ -2.29	not detected
APQ12	YIL040W	NYV1	Q12255	253 aa		0.76	□□□□□ -2.29
APQ12	YIL040W	SSM4	P40318	1319 aa		0.75	□□□□□ -2.29
APQ12	YIL040W	CDC24	P11433	854 aa	Predicted RBP	0.75	□□□□□ -2.29
APQ12	YIL040W	PSY4	P38193	441 aa		0.75	□□□□□ -2.29
APQ12	YIL040W	MUM2	P38236	366 aa		0.75	□□□□□ -2.29
APQ12	YIL040W	MBB1	P39534	108 aa		0.75	□□□□□ -2.29
APQ12	YIL040W	ALG5	P40350	334 aa		0.75	□□□□□ -2.29
APQ12	YIL040W	MDE1	P47095	244 aa		0.75	□□□□□ -2.29
APQ12	YIL040W	YIP1	P53039	248 aa		0.75	□□□□□ -2.29
APQ12	YIL040W	YGL262W	P53054	175 aa		0.75	□□□□□ -2.29
APQ12	YIL040W	KTR6	P54070	446 aa		0.75	□□□□□ -2.29
APQ12	YIL040W	TPS1	Q00764	495 aa	Known RBP	0.75	□□□□□ -2.29
APQ12	YIL040W	APC2	Q12440	853 aa		0.75	□□□□□ -2.29
APQ12	YIL040W	SPE4	Q12455	300 aa		0.75	□□□□□ -2.29
APQ12	YIL040W	PRR1	P28708	518 aa		0.74	□□□□□ -2.29
APQ12	YIL040W	HIR2	P32480	875 aa		0.74	□□□□□ -2.29
APQ12	YIL040W	SLC1	P33333	303 aa		0.74	□□□□□ -2.29
APQ12	YIL040W	PRY2	P36110	329 aa		0.74	□□□□□ -2.29
APQ12	YIL040W	YPT35	P38815	214 aa	Known RBP	0.74	□□□□□ -2.29
APQ12	YIL040W	VID30	P53076	958 aa		0.74	□□□□□ -2.29
APQ12	YIL040W	ARE2	P53629	642 aa	Known RBP	0.74	□□□□□ -2.29
APQ12	YIL040W	IPI3	P53877	555 aa		0.74	□□□□□ -2.29
APQ12	YIL040W	UBX4	P54730	416 aa		0.74	□□□□□ -2.29
APQ12	YIL040W	SLG1	P54867	378 aa		0.74	□□□□□ -2.29
APQ12	YIL040W	YPR022C	Q12139	1133 aa		0.74	□□□□□ -2.29
APQ12	YIL040W	KAR3	P17119	729 aa		0.73	□□□□□ -2.29
APQ12	YIL040W	PEP3	P27801	918 aa		0.73	□□□□□ -2.29
APQ12	YIL040W	ITR1	P30605	584 aa		0.73	□□□□□ -2.29
APQ12	YIL040W	GPI18	P38211	433 aa		0.73	□□□□□ -2.29
APQ12	YIL040W	YGP1	P38616	354 aa	Known RBP	0.73	□□□□□ -2.29
APQ12	YIL040W	AXL2	P38928	823 aa		0.73	□□□□□ -2.29
APQ12	YIL040W	CCT6	P39079	546 aa		0.73	□□□□□ -2.29
APQ12	YIL040W	OXA1	P39952	402 aa		0.73	□□□□□ -2.29
APQ12	YIL040W	ALD5	P40047	520 aa	Known RBP	0.73	□□□□□ -2.29
APQ12	YIL040W	KAP123	P40069	1113 aa	Known RBP	0.73	□□□□□ -2.29
APQ12	YIL040W	OCA1	P50946	238 aa	Predicted RBP	0.73	□□□□□ -2.29
APQ12	YIL040W	YNR048W	P53740	393 aa		0.73	□□□□□ -2.29
APQ12	YIL040W	MTQ1	P53944	314 aa		0.73	□□□□□ -2.29
APQ12	YIL040W	FIN1	Q03898	291 aa		0.73	□□□□□ -2.29
APQ12	YIL040W	VPS38	Q05919	439 aa		0.73	□□□□□ -2.29
APQ12	YIL040W	PIN3	Q06449	215 aa		0.73	□□□□□ -2.29
APQ12	YIL040W	TEF1	P02994	458 aa	Known RBP	0.72	□□□□□ -2.29
APQ12	YIL040W	ARG4	P04076	463 aa	Predicted RBP	0.72	□□□□□ -2.29
APQ12	YIL040W	POL4	P25615	582 aa		0.72	□□□□□ -2.29
APQ12	YIL040W	DBF20	P32328	564 aa		0.72	□□□□□ -2.29
APQ12	YIL040W	APE2	P32454	952 aa	Known RBP	0.72	□□□□□ -2.29
APQ12	YIL040W	GYP6	P32806	458 aa		0.72	□□□□□ -2.29
APQ12	YIL040W	OM14	P38325	134 aa		0.72	□□□□□ -2.29
APQ12	YIL040W	YMR147W	P40218	223 aa	Known RBP	0.72	□□□□□ -2.29
APQ12	YIL040W	SAP185	P40856	1058 aa		0.72	□□□□□ -2.29
APQ12	YIL040W	BIR1	P47134	954 aa		0.72	□□□□□ -2.29
APQ12	YIL040W	PGU1	P47180	361 aa		0.72	□□□□□ -2.29
APQ12	YIL040W	UPF3	P48412	387 aa	Known RBP	0.72	□□□□□ -2.29
APQ12	YIL040W	IMD4	P50094	524 aa	Known RBP	0.72	□□□□□ -2.29
APQ12	YIL040W	NCS2	P53923	493 aa	Predicted RBP	0.72	□□□□□ -2.29
APQ12	YIL040W	GTR1	Q00582	310 aa		0.72	□□□□□ -2.29
APQ12	YIL040W	YSA1	Q01976	231 aa		0.72	□□□□□ -2.29
APQ12	YIL040W	CMS1	Q07897	291 aa	Known RBP	0.72	□□□□□ -2.29
APQ12	YIL040W	SGT1	Q08446	395 aa		0.72	□□□□□ -2.29
APQ12	YIL040W	SKM1	Q12469	655 aa		0.72	□□□□□ -2.29
APQ12	YIL040W	RPL19A	P0CX82	189 aa	Known RBP	0.71	□□□□□ -2.3
APQ12	YIL040W	RPL19B	P0CX83	189 aa	Predicted RBP	0.71	□□□□□ -2.3
APQ12	YIL040W	RPB5	P20434	215 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	ECM25	P32525	599 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	ZUO1	P32527	433 aa	Known RBP	0.71	□□□□□ -2.3
APQ12	YIL040W	CYM1	P32898	989 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	YBL029W	P38201	376 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	PFF1	P38244	976 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	KEL1	P38853	1164 aa	Known RBP	0.71	□□□□□ -2.3
APQ12	YIL040W	BAT1	P38891	393 aa	Known RBP	0.71	□□□□□ -2.3
APQ12	YIL040W	SPO73	P40031	143 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	YFR057W	P43625	151 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	ECM27	P47144	725 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	RPN14	P53196	417 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	IOC4	Q04213	475 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	RIF2	Q06208	395 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	HRT1	Q08273	121 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	SMF3	Q12078	473 aa	Predicted RBP	0.71	□□□□□ -2.3
APQ12	YIL040W	RLM1	Q12224	676 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	FOL3	Q12676	427 aa	Predicted RBP	0.71	□□□□□ -2.3
APQ12	YIL040W	RTP1	Q12751	981 aa		0.71	□□□□□ -2.3
APQ12	YIL040W	HIS4	P00815	799 aa	Known RBP	0.7	□□□□□ -2.3
APQ12	YIL040W	FUM1	P08417	488 aa	Known RBP	0.7	□□□□□ -2.3
APQ12	YIL040W	MSI1	P13712	422 aa		0.7	□□□□□ -2.3
APQ12	YIL040W	PRD1	P25375	712 aa		0.7	□□□□□ -2.3
APQ12	YIL040W	CDC50	P25656	391 aa		0.7	□□□□□ -2.3
APQ12	YIL040W	TCD2	P36101	447 aa	Known RBP	0.7	□□□□□ -2.3
APQ12	YIL040W	MRPL27	P36526	146 aa	Predicted RBP	0.7	□□□□□ -2.3
APQ12	YIL040W	FRT2	P39734	528 aa		0.7	□□□□□ -2.3
APQ12	YIL040W	JLP2	P40206	208 aa		0.7	□□□□□ -2.3
APQ12	YIL040W	LCL3	P53153	274 aa		0.7	□□□□□ -2.3
APQ12	YIL040W	FRE4	P53746	719 aa		0.7	□□□□□ -2.3
APQ12	YIL040W	DSL1	P53847	754 aa		0.7	□□□□□ -2.3
APQ12	YIL040W	RHO5	P53879	331 aa	Known RBP	0.7	□□□□□ -2.3
APQ12	YIL040W	YMR102C	Q03177	834 aa		0.7	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 10.6 ms