RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W YPQ1Q12010 308 aa2.44□□□□□ -2.02
RPF1YHR088W PLP2Q12017 286 aa2.44□□□□□ -2.02
RPF1YHR088W FAB1P34756 2278 aa2.44□□□□□ -2.02
RPF1YHR088W GAL80P04387 435 aa2.43□□□□□ -2.02
RPF1YHR088W VID24P38263 362 aa2.43□□□□□ -2.02
RPF1YHR088W YNR048WP53740 393 aa2.43□□□□□ -2.02
RPF1YHR088W DSL1P53847 754 aa2.43□□□□□ -2.02
RPF1YHR088W HIS4P00815 799 aaKnown RBP2.42□□□□□ -2.02
RPF1YHR088W ARG4P04076 463 aaPredicted RBP2.42□□□□□ -2.02
RPF1YHR088W ECM25P32525 599 aa2.42□□□□□ -2.02
RPF1YHR088W MRPS9P38120 278 aa2.42□□□□□ -2.02
RPF1YHR088W AIM10P39965 576 aaKnown RBP2.42□□□□□ -2.02
RPF1YHR088W YGL108CP53139 140 aa2.42□□□□□ -2.02
RPF1YHR088W RMD9P53140 646 aaKnown RBP2.42□□□□□ -2.02
RPF1YHR088W YDR239CQ03780 787 aa2.42□□□□□ -2.02
RPF1YHR088W RPC11Q04307 110 aaPredicted RBP2.42□□□□□ -2.02
RPF1YHR088W AIM32Q04689 311 aa2.42□□□□□ -2.02
RPF1YHR088W SNX3Q08826 162 aaKnown RBP2.42□□□□□ -2.02
RPF1YHR088W RRD2Q12461 358 aa2.42□□□□□ -2.02
RPF1YHR088W SEM1O94742 89 aa2.41□□□□□ -2.02
RPF1YHR088W DPB3P27344 201 aa2.41□□□□□ -2.02
RPF1YHR088W YJR008WP47085 338 aa2.41□□□□□ -2.02
RPF1YHR088W PCP1P53259 346 aa2.41□□□□□ -2.02
RPF1YHR088W MEP3P53390 489 aa2.41□□□□□ -2.02
RPF1YHR088W NDE2Q07500 545 aa2.41□□□□□ -2.02
RPF1YHR088W YPR022CQ12139 1133 aa2.41□□□□□ -2.02
RPF1YHR088W TEF1P02994 458 aaKnown RBP2.4□□□□□ -2.03
RPF1YHR088W ATP10P18496 279 aa2.4□□□□□ -2.03
RPF1YHR088W SNT1P25357 1226 aa2.4□□□□□ -2.03
RPF1YHR088W FUI1P38196 639 aa2.4□□□□□ -2.03
RPF1YHR088W KEL1P38853 1164 aaKnown RBP2.4□□□□□ -2.03
RPF1YHR088W SEO1P39709 593 aa2.4□□□□□ -2.03
RPF1YHR088W TFG2P41896 400 aaPredicted RBP2.4□□□□□ -2.03
RPF1YHR088W ARE2P53629 642 aaKnown RBP2.4□□□□□ -2.03
RPF1YHR088W HSP31Q04432 237 aa2.4□□□□□ -2.03
RPF1YHR088W JID1Q12350 301 aa2.4□□□□□ -2.03
RPF1YHR088W BI3Q9ZZW7 517 aa2.4□□□□□ -2.03
RPF1YHR088W PSK1P31374 1356 aa2.39□□□□□ -2.03
RPF1YHR088W CBS1P14066 229 aa2.39□□□□□ -2.03
RPF1YHR088W SLY1P22213 666 aa2.39□□□□□ -2.03
RPF1YHR088W RAD14P28519 371 aa2.39□□□□□ -2.03
RPF1YHR088W YBR137WP38276 179 aa2.39□□□□□ -2.03
RPF1YHR088W SGN1P40561 250 aaKnown RBP RIP-Chip data2.39□□□□□ -2.03not detected
RPF1YHR088W CHS6P40955 746 aa2.39□□□□□ -2.03
RPF1YHR088W PET130P47065 347 aa2.39□□□□□ -2.03
RPF1YHR088W IGO1P53897 168 aa2.39□□□□□ -2.03
RPF1YHR088W GIR2Q03768 265 aaPredicted RBP2.39□□□□□ -2.03
RPF1YHR088W CYC3P06182 269 aa2.38□□□□□ -2.03
RPF1YHR088W THI2P38141 450 aa2.38□□□□□ -2.03
RPF1YHR088W SSU1P41930 458 aa2.38□□□□□ -2.03
RPF1YHR088W MDE1P47095 244 aa2.38□□□□□ -2.03
RPF1YHR088W TWF1P53250 332 aa2.38□□□□□ -2.03
RPF1YHR088W FRE4P53746 719 aa2.38□□□□□ -2.03
RPF1YHR088W YPR091CQ06833 770 aa2.38□□□□□ -2.03
RPF1YHR088W FOB1O13329 566 aa2.37□□□□□ -2.03
RPF1YHR088W PRR1P28708 518 aa2.37□□□□□ -2.03
RPF1YHR088W ITR1P30605 584 aa2.37□□□□□ -2.03
RPF1YHR088W SSH4P32343 579 aa2.37□□□□□ -2.03
RPF1YHR088W APE2P32454 952 aaKnown RBP2.37□□□□□ -2.03
RPF1YHR088W CSE2P33308 149 aa2.37□□□□□ -2.03
RPF1YHR088W SPT10P35208 640 aa2.37□□□□□ -2.03
RPF1YHR088W BMT2P38278 337 aa2.37□□□□□ -2.03
RPF1YHR088W LYS1P38998 373 aaRIP-Chip data2.37□□□□□ -2.03not detected
RPF1YHR088W CCT2P39076 527 aaKnown RBP2.37□□□□□ -2.03
RPF1YHR088W NOP16P40007 231 aaKnown RBP2.37□□□□□ -2.03
RPF1YHR088W MET28P40573 187 aa2.37□□□□□ -2.03
RPF1YHR088W MKC7P53379 596 aa2.37□□□□□ -2.03
RPF1YHR088W MTQ1P53944 314 aa2.37□□□□□ -2.03
RPF1YHR088W YDR387CQ04162 555 aa2.37□□□□□ -2.03
RPF1YHR088W TAP42Q04372 366 aa2.37□□□□□ -2.03
RPF1YHR088W RTP1Q12751 981 aa2.37□□□□□ -2.03
RPF1YHR088W AFG1P32317 509 aa2.36□□□□□ -2.03
RPF1YHR088W PRP21P32524 280 aaPredicted RBP2.36□□□□□ -2.03
RPF1YHR088W SEC66P33754 206 aa2.36□□□□□ -2.03
RPF1YHR088W MIG3P39943 394 aa2.36□□□□□ -2.03
RPF1YHR088W MRX6P48564 524 aa2.36□□□□□ -2.03
RPF1YHR088W IZH2Q12442 317 aa2.36□□□□□ -2.03
RPF1YHR088W SPB1P25582 841 aaPredicted RBP2.35□□□□□ -2.03
RPF1YHR088W CYS4P32582 507 aaKnown RBP2.35□□□□□ -2.03
RPF1YHR088W MUD2P36084 527 aaKnown RBP2.35□□□□□ -2.03
RPF1YHR088W YHR054CP38780 354 aa2.35□□□□□ -2.03
RPF1YHR088W YHR131CP38835 850 aa2.35□□□□□ -2.03
RPF1YHR088W PCF11P39081 626 aaPredicted RBP2.35□□□□□ -2.03
RPF1YHR088W VTC2P43585 828 aa2.35□□□□□ -2.03
RPF1YHR088W YGR149WP48236 432 aa2.35□□□□□ -2.03
RPF1YHR088W ADA2Q02336 434 aa2.35□□□□□ -2.03
RPF1YHR088W SNU66Q12420 587 aaPredicted RBP2.35□□□□□ -2.03
RPF1YHR088W GPH1P06738 902 aaKnown RBP2.34□□□□□ -2.03
RPF1YHR088W SPS4P09937 338 aa2.34□□□□□ -2.03
RPF1YHR088W NAM2P11325 894 aa2.34□□□□□ -2.03
RPF1YHR088W RPB5P20434 215 aa2.34□□□□□ -2.03
RPF1YHR088W OLE1P21147 510 aaKnown RBP2.34□□□□□ -2.03
RPF1YHR088W AAT2P23542 418 aaKnown RBP2.34□□□□□ -2.03
RPF1YHR088W NIP100P33420 868 aa2.34□□□□□ -2.03
RPF1YHR088W CST26P38226 397 aa2.34□□□□□ -2.03
RPF1YHR088W TIM17P39515 158 aa2.34□□□□□ -2.03
RPF1YHR088W RMD8P43620 662 aa2.34□□□□□ -2.03
RPF1YHR088W RHO5P53879 331 aaKnown RBP2.34□□□□□ -2.03
RPF1YHR088W REX4Q08237 289 aa2.34□□□□□ -2.03
RPF1YHR088W CBP6P07253 162 aaPredicted RBP2.33□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 79.2 ms