RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 Q4G0T1 1027 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 SLC30A10Q6XR72 485 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 NCAPG2Q86XI2 1143 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 POTEDQ86YR6 584 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 PYM1Q9BRP8 204 aaKnown RBP21.24■□□□□ 0.99
VPS28-207ENST00000526977 KCNF1Q9H3M0 494 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 A1CFQ9NQ94 594 aaKnown RBP21.24■□□□□ 0.99
VPS28-207ENST00000526977 CYP39A1Q9NYL5 469 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 RPTORQ8N122 1335 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 SLC37A4O43826 429 aa21.23■□□□□ 0.99
VPS28-207ENST00000526977 SMC2O95347 1197 aa21.23■□□□□ 0.99
VPS28-207ENST00000526977 ERVK-9P63128 1117 aa21.23■□□□□ 0.99
VPS28-207ENST00000526977 ERVK-24P63145 666 aa21.23■□□□□ 0.99
VPS28-207ENST00000526977 Q3C1V9 767 aa21.23■□□□□ 0.99
VPS28-207ENST00000526977 CCDC186Q7Z3E2 898 aa21.23■□□□□ 0.99
VPS28-207ENST00000526977 MLKLQ8NB16 471 aa21.23■□□□□ 0.99
VPS28-207ENST00000526977 GPRC5AQ8NFJ5 357 aa21.23■□□□□ 0.99
VPS28-207ENST00000526977 PFASO15067 1338 aa21.23■□□□□ 0.99
VPS28-207ENST00000526977 MYH7BA7E2Y1 1941 aa21.23■□□□□ 0.99
VPS28-207ENST00000526977 PTGS1P23219 599 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 TPM4P67936 248 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 CCNA1P78396 465 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 DPYDQ12882 1025 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 PDXDC2PQ6P474 469 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.22■□□□□ 0.99
VPS28-207ENST00000526977 ANKRD35Q8N283 1001 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 SHCBP1Q8NEM2 672 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 TAAR1Q96RJ0 339 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 RMDN3Q96TC7 470 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 MROH8Q9H579 483 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 FRMPD4Q14CM0 1322 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 FAM155AB1AL88 458 aaPredicted RBP21.22■□□□□ 0.99
VPS28-207ENST00000526977 TBX3O15119 743 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 PEX10O60683 326 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 ERCC3P19447 782 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 CASP1P29466 404 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 MYL5Q02045 173 aa21.22■□□□□ 0.99
VPS28-207ENST00000526977 MARCH6O60337 910 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 PRR16Q569H4 304 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 XRRA1Q6P2D8 792 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 SLFN12Q8IYM2 578 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 AK8Q96MA6 479 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 FAM86B1E9PN63 330 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 FAM86B2P0C5J1 330 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 SREBF2Q12772 1141 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 TMEM266Q2M3C6 531 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 CEP55Q53EZ4 464 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 ARHGEF16Q5VV41 709 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 PCNX4Q63HM2 1172 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 NSUN6Q8TEA1 469 aaKnown RBP21.21■□□□□ 0.99
VPS28-207ENST00000526977 STAMQ92783 540 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 MTRQ99707 1265 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 RAB34Q9BZG1 259 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 PXMP2Q9NR77 195 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 MORF4L1Q9UBU8 362 aa21.21■□□□□ 0.99
VPS28-207ENST00000526977 PP2D1A8MPX8 630 aa21.2■□□□□ 0.98
VPS28-207ENST00000526977 TXLNAP40222 546 aa21.2■□□□□ 0.98
VPS28-207ENST00000526977 TXKP42681 527 aa21.2■□□□□ 0.98
VPS28-207ENST00000526977 PDIA5Q14554 519 aa21.2■□□□□ 0.98
VPS28-207ENST00000526977 KARSQ15046 597 aaKnown RBP21.2■□□□□ 0.98
VPS28-207ENST00000526977 CCDC144BQ3MJ40 725 aa21.2■□□□□ 0.98
VPS28-207ENST00000526977 FAM20AQ96MK3 541 aa21.2■□□□□ 0.98
VPS28-207ENST00000526977 GSDMAQ96QA5 445 aa21.2■□□□□ 0.98
VPS28-207ENST00000526977 CCSER1Q9C0I3 900 aa21.2■□□□□ 0.98
VPS28-207ENST00000526977 KCNMB3Q9NPA1 279 aa21.2■□□□□ 0.98
VPS28-207ENST00000526977 FXR2P51116 673 aaKnown RBP eCLIP21.19■□□□□ 0.98
VPS28-207ENST00000526977 UBXN2AP68543 259 aa21.19■□□□□ 0.98
VPS28-207ENST00000526977 PGM5Q15124 567 aa21.19■□□□□ 0.98
VPS28-207ENST00000526977 RBBP6Q7Z6E9 1792 aaKnown RBP21.19■□□□□ 0.98
VPS28-207ENST00000526977 ANKRD13CQ8N6S4 541 aa21.19■□□□□ 0.98
VPS28-207ENST00000526977 DNERQ8NFT8 737 aa21.19■□□□□ 0.98
VPS28-207ENST00000526977 HAS1Q92839 578 aa21.19■□□□□ 0.98
VPS28-207ENST00000526977 PDCD2LQ9BRP1 358 aa21.19■□□□□ 0.98
VPS28-207ENST00000526977 UBA7P41226 1012 aa21.19■□□□□ 0.98
VPS28-207ENST00000526977 SETQ01105 290 aaPredicted RBP21.19■□□□□ 0.98
VPS28-207ENST00000526977 LENG9Q96B70 501 aa21.19■□□□□ 0.98
VPS28-207ENST00000526977 IFNKQ9P0W0 207 aa21.19■□□□□ 0.98
VPS28-207ENST00000526977 DACH1Q9UI36 760 aa21.19■□□□□ 0.98
VPS28-207ENST00000526977 PCDHA12Q9UN75 941 aa21.19■□□□□ 0.98
VPS28-207ENST00000526977 IGLV3-22A0A075B6J6 115 aa21.18■□□□□ 0.98
VPS28-207ENST00000526977 IGF2BP3O00425 579 aaKnown RBP eCLIP21.18■□□□□ 0.98
VPS28-207ENST00000526977 MEIS1O00470 390 aa21.18■□□□□ 0.98
VPS28-207ENST00000526977 ATP1A3P13637 1013 aa21.18■□□□□ 0.98
VPS28-207ENST00000526977 EIF2AK2P19525 551 aaKnown RBP21.18■□□□□ 0.98
VPS28-207ENST00000526977 TECP42680 631 aa21.18■□□□□ 0.98
VPS28-207ENST00000526977 NIPA1Q7RTP0 329 aa21.18■□□□□ 0.98
VPS28-207ENST00000526977 IFNL1Q8IU54 200 aa21.18■□□□□ 0.98
VPS28-207ENST00000526977 IGSF22Q8N9C0 903 aa21.18■□□□□ 0.98
VPS28-207ENST00000526977 MXRA8Q9BRK3 442 aa21.18■□□□□ 0.98
VPS28-207ENST00000526977 XPO4Q9C0E2 1151 aaKnown RBP21.18■□□□□ 0.98
VPS28-207ENST00000526977 DISC1Q9NRI5 854 aa21.18■□□□□ 0.98
VPS28-207ENST00000526977 FANCLQ9NW38 375 aa21.18■□□□□ 0.98
VPS28-207ENST00000526977 FANCCQ00597 558 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 KCTD2Q14681 263 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 CYP2W1Q8TAV3 490 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 ETNPPLQ8TBG4 499 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 MED15Q96RN5 788 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 IWS1Q96ST2 819 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 CREBZFQ9NS37 354 aa21.17■□□□□ 0.98
VPS28-207ENST00000526977 GTPBP6O43824 516 aaPredicted RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms