RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 CALM2P0DP24 149 aa18.83■□□□□ 0.6
COL9A3-208ENST00000469802 CALM3P0DP25 149 aa18.83■□□□□ 0.6
COL9A3-208ENST00000469802 FOSL2P15408 326 aa18.83■□□□□ 0.6
COL9A3-208ENST00000469802 RXRAP19793 462 aa18.83■□□□□ 0.6
COL9A3-208ENST00000469802 PSEN2P49810 448 aa18.83■□□□□ 0.6
COL9A3-208ENST00000469802 MRPS9P82933 396 aaKnown RBP18.83■□□□□ 0.6
COL9A3-208ENST00000469802 BFSP2Q13515 415 aa18.83■□□□□ 0.6
COL9A3-208ENST00000469802 HSDL1Q3SXM5 330 aa18.83■□□□□ 0.6
COL9A3-208ENST00000469802 NFXL1Q6ZNB6 911 aa18.83■□□□□ 0.6
COL9A3-208ENST00000469802 CAGE1Q8TC20 777 aa18.83■□□□□ 0.6
COL9A3-208ENST00000469802 PIBF1Q8WXW3 757 aa18.83■□□□□ 0.6
COL9A3-208ENST00000469802 DHX38Q92620 1227 aaKnown RBP18.83■□□□□ 0.6
COL9A3-208ENST00000469802 MEIS2O14770 477 aa18.82■□□□□ 0.6
COL9A3-208ENST00000469802 PPFIA4O75335 1185 aa18.82■□□□□ 0.6
COL9A3-208ENST00000469802 ICAM3P32942 547 aa18.82■□□□□ 0.6
COL9A3-208ENST00000469802 MFSD10Q14728 455 aa18.82■□□□□ 0.6
COL9A3-208ENST00000469802 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.82■□□□□ 0.6
COL9A3-208ENST00000469802 AFAP1L1Q8TED9 768 aa18.82■□□□□ 0.6
COL9A3-208ENST00000469802 ZFP91Q96JP5 570 aaPredicted RBP18.82■□□□□ 0.6
COL9A3-208ENST00000469802 SPATA33Q96N06 139 aa18.82■□□□□ 0.6
COL9A3-208ENST00000469802 HDAC6Q9UBN7 1215 aa18.82■□□□□ 0.6
COL9A3-208ENST00000469802 SEC63Q9UGP8 760 aaKnown RBP18.82■□□□□ 0.6
COL9A3-208ENST00000469802 NOD1Q9Y239 953 aa18.82■□□□□ 0.6
COL9A3-208ENST00000469802 YBX2Q9Y2T7 364 aaKnown RBP18.82■□□□□ 0.6
COL9A3-208ENST00000469802 SLC4A7Q9Y6M7 1214 aa18.82■□□□□ 0.6
COL9A3-208ENST00000469802 CHMP4BP1P59074 171 aa18.81■□□□□ 0.6
COL9A3-208ENST00000469802 SEMA3FQ13275 785 aa18.81■□□□□ 0.6
COL9A3-208ENST00000469802 KIAA0753Q2KHM9 967 aa18.81■□□□□ 0.6
COL9A3-208ENST00000469802 RNF20Q5VTR2 975 aa18.81■□□□□ 0.6
COL9A3-208ENST00000469802 USP17L6PQ6QN14 398 aa18.81■□□□□ 0.6
COL9A3-208ENST00000469802 TMTC3Q6ZXV5 915 aa18.81■□□□□ 0.6
COL9A3-208ENST00000469802 DEFB128Q7Z7B8 93 aa18.81■□□□□ 0.6
COL9A3-208ENST00000469802 CMTR1Q8N1G2 835 aaKnown RBP18.81■□□□□ 0.6
COL9A3-208ENST00000469802 CCDC155Q8N6L0 562 aa18.81■□□□□ 0.6
COL9A3-208ENST00000469802 C16orf70Q9BSU1 422 aa18.81■□□□□ 0.6
COL9A3-208ENST00000469802 LRRC2Q9BYS8 371 aa18.81■□□□□ 0.6
COL9A3-208ENST00000469802 SLC12A7Q9Y666 1083 aa18.81■□□□□ 0.6
COL9A3-208ENST00000469802 MICAL3Q7RTP6 2002 aa18.8■□□□□ 0.6
COL9A3-208ENST00000469802 TRANK1O15050 2925 aa18.8■□□□□ 0.6
COL9A3-208ENST00000469802 CDC45O75419 566 aa18.8■□□□□ 0.6
COL9A3-208ENST00000469802 GPNMBQ14956 572 aa18.8■□□□□ 0.6
COL9A3-208ENST00000469802 TSGA10IPQ3SY00 556 aa18.8■□□□□ 0.6
COL9A3-208ENST00000469802 GNPTABQ3T906 1256 aa18.8■□□□□ 0.6
COL9A3-208ENST00000469802 PCNX4Q63HM2 1172 aa18.8■□□□□ 0.6
COL9A3-208ENST00000469802 C7orf31Q8N865 590 aa18.8■□□□□ 0.6
COL9A3-208ENST00000469802 RETREG2Q8NC44 543 aa18.8■□□□□ 0.6
COL9A3-208ENST00000469802 MSRAQ9UJ68 235 aa18.8■□□□□ 0.6
COL9A3-208ENST00000469802 SIP14410 1827 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 ZBBXA8MT70 800 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 SPATA31C2B4DYI2 1134 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 DLL1O00548 723 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 ATP2A2P16615 1042 aaKnown RBP18.79■□□□□ 0.6
COL9A3-208ENST00000469802 HOXC8P31273 242 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 EXOSC10Q01780 885 aaKnown RBP18.79■□□□□ 0.6
COL9A3-208ENST00000469802 TRIM71Q2Q1W2 868 aaKnown RBP18.79■□□□□ 0.6
COL9A3-208ENST00000469802 XRRA1Q6P2D8 792 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 APOA5Q6Q788 366 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 MICU3Q86XE3 530 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 RAB11FIP4Q86YS3 637 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 RASEFQ8IZ41 740 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 FANCBQ8NB91 859 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 SMARCC2Q8TAQ2 1214 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 CUL5Q93034 780 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 NEK1Q96PY6 1258 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 ALG1Q9BT22 464 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 NKX2-4Q9H2Z4 354 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 BCAS3Q9H6U6 928 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 PCDHA11Q9Y5I1 949 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 KAT6AQ92794 2004 aa18.79■□□□□ 0.6
COL9A3-208ENST00000469802 COL4A4P53420 1690 aaPredicted RBP18.79■□□□□ 0.6
COL9A3-208ENST00000469802 CNTNAP5Q8WYK1 1306 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 FIBPO43427 364 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 SORBS3O60504 671 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 ACTN1P12814 892 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 SELPP16109 830 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 RABGGTBP53611 331 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 PTK7Q13308 1070 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 HIC1Q14526 733 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 ADCK5Q3MIX3 580 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 TRAF7Q6Q0C0 670 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 METTL7BQ6UX53 244 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 LRRC8DQ7L1W4 858 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 WNT8BQ93098 351 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 SLC9A7Q96T83 725 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 MLXIPQ9HAP2 919 aa18.78■□□□□ 0.6
COL9A3-208ENST00000469802 BAIAP3O94812 1187 aa18.77■□□□□ 0.6
COL9A3-208ENST00000469802 CXCL10P02778 98 aa18.77■□□□□ 0.6
COL9A3-208ENST00000469802 LGALS2P05162 132 aa18.77■□□□□ 0.6
COL9A3-208ENST00000469802 CKBP12277 381 aa18.77■□□□□ 0.6
COL9A3-208ENST00000469802 NEDD9Q14511 834 aa18.77■□□□□ 0.6
COL9A3-208ENST00000469802 SENP7Q9BQF6 1050 aa18.77■□□□□ 0.6
COL9A3-208ENST00000469802 PRDM12Q9H4Q4 367 aa18.77■□□□□ 0.6
COL9A3-208ENST00000469802 hCG_1642624A0A1W2PR95 340 aa18.76■□□□□ 0.59
COL9A3-208ENST00000469802 PARNO95453 639 aaKnown RBP18.76■□□□□ 0.59
COL9A3-208ENST00000469802 MYOGP15173 224 aa18.76■□□□□ 0.59
COL9A3-208ENST00000469802 FUT2Q10981 343 aa18.76■□□□□ 0.59
COL9A3-208ENST00000469802 DHX32Q7L7V1 743 aaKnown RBP18.76■□□□□ 0.59
COL9A3-208ENST00000469802 USP38Q8NB14 1042 aa18.76■□□□□ 0.59
COL9A3-208ENST00000469802 PHOSPHO2Q8TCD6 241 aa18.76■□□□□ 0.59
COL9A3-208ENST00000469802 TCEANC2Q96MN5 208 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms