RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W YLR278CQ05854 1341 aa5.48□□□□□ -1.53
PRP40YKL012W PGK1P00560 416 aaKnown RBP5.48□□□□□ -1.53
PRP40YKL012W UTR4P32626 227 aa5.48□□□□□ -1.53
PRP40YKL012W REC114P32841 428 aa5.48□□□□□ -1.53
PRP40YKL012W GDT1P38301 280 aaPredicted RBP5.48□□□□□ -1.53
PRP40YKL012W CCT2P39076 527 aaKnown RBP5.48□□□□□ -1.53
PRP40YKL012W YNL234WP53857 426 aa5.48□□□□□ -1.53
PRP40YKL012W SPT6P23615 1451 aaKnown RBP5.48□□□□□ -1.53
PRP40YKL012W CAR1P00812 333 aaKnown RBP5.47□□□□□ -1.53
PRP40YKL012W DAP2P18962 818 aa5.47□□□□□ -1.53
PRP40YKL012W GND1P38720 489 aaKnown RBP5.47□□□□□ -1.53
PRP40YKL012W ATF1P40353 525 aa5.47□□□□□ -1.53
PRP40YKL012W YIL024CP40543 189 aa5.47□□□□□ -1.53
PRP40YKL012W NCS2P53923 493 aaPredicted RBP5.47□□□□□ -1.53
PRP40YKL012W ERG13P54839 491 aaKnown RBP5.47□□□□□ -1.53
PRP40YKL012W CRC1Q12289 327 aa5.47□□□□□ -1.53
PRP40YKL012W STF1P01098 86 aa5.47□□□□□ -1.53
PRP40YKL012W SCEIP03882 235 aa5.47□□□□□ -1.53
PRP40YKL012W YAP1P19880 650 aaKnown RBP5.47□□□□□ -1.53
PRP40YKL012W SPC110P32380 944 aa5.47□□□□□ -1.53
PRP40YKL012W PHD1P36093 366 aa5.47□□□□□ -1.53
PRP40YKL012W CBP4P37267 147 aa5.47□□□□□ -1.53
PRP40YKL012W MLH1P38920 769 aa5.47□□□□□ -1.53
PRP40YKL012W YER130CP39959 443 aa5.47□□□□□ -1.53
PRP40YKL012W NAS2P40555 220 aa5.47□□□□□ -1.53
PRP40YKL012W HSP31Q04432 237 aa5.47□□□□□ -1.53
PRP40YKL012W ECI1Q05871 280 aa5.47□□□□□ -1.53
PRP40YKL012W DBP9Q06218 594 aaKnown RBP5.47□□□□□ -1.53
PRP40YKL012W GLK1P17709 500 aaKnown RBP5.46□□□□□ -1.54
PRP40YKL012W YPK3P38070 525 aa5.46□□□□□ -1.54
PRP40YKL012W PFF1P38244 976 aa5.46□□□□□ -1.54
PRP40YKL012W EFM2P38347 419 aa5.46□□□□□ -1.54
PRP40YKL012W PES4P39684 611 aa5.46□□□□□ -1.54
PRP40YKL012W IAH1P41734 238 aa5.46□□□□□ -1.54
PRP40YKL012W GAT1P43574 510 aa5.46□□□□□ -1.54
PRP40YKL012W YJR011CP47086 261 aaPredicted RBP5.46□□□□□ -1.54
PRP40YKL012W MDE1P47095 244 aa5.46□□□□□ -1.54
PRP40YKL012W RPN9Q04062 393 aaKnown RBP5.46□□□□□ -1.54
PRP40YKL012W YDR341CQ05506 607 aaKnown RBP5.46□□□□□ -1.54
PRP40YKL012W PHO92Q06390 306 aa5.46□□□□□ -1.54
PRP40YKL012W PSY3Q12318 242 aa5.46□□□□□ -1.54
PRP40YKL012W ARP6Q12509 438 aa5.46□□□□□ -1.54
PRP40YKL012W YEL043WP32618 956 aa5.45□□□□□ -1.54
PRP40YKL012W PDR3P33200 976 aa5.45□□□□□ -1.54
PRP40YKL012W MRPL4P36517 319 aa5.45□□□□□ -1.54
PRP40YKL012W YTA12P40341 825 aa5.45□□□□□ -1.54
PRP40YKL012W YNL181WP53878 407 aa5.45□□□□□ -1.54
PRP40YKL012W GLO2Q05584 274 aa5.45□□□□□ -1.54
PRP40YKL012W REX3Q12090 404 aa5.45□□□□□ -1.54
PRP40YKL012W YDR061WQ12298 539 aa5.45□□□□□ -1.54
PRP40YKL012W HIR3P47171 1648 aa5.45□□□□□ -1.54
PRP40YKL012W PMR1P13586 950 aa5.44□□□□□ -1.54
PRP40YKL012W YCR007CP25354 239 aa5.44□□□□□ -1.54
PRP40YKL012W RIM1P32445 135 aaKnown RBP5.44□□□□□ -1.54
PRP40YKL012W ERG7P38604 731 aa5.44□□□□□ -1.54
PRP40YKL012W FLO5P38894 1075 aa5.44□□□□□ -1.54
PRP40YKL012W FAU1P40099 211 aa5.44□□□□□ -1.54
PRP40YKL012W RTS2P40962 232 aa5.44□□□□□ -1.54
PRP40YKL012W SAS2P40963 338 aa5.44□□□□□ -1.54
PRP40YKL012W EPL1P43572 832 aa5.44□□□□□ -1.54
PRP40YKL012W GPI1P53306 609 aa5.44□□□□□ -1.54
PRP40YKL012W IZH1Q03419 316 aa5.44□□□□□ -1.54
PRP40YKL012W IVY1Q04934 453 aa5.44□□□□□ -1.54
PRP40YKL012W NDL1Q06568 189 aa5.44□□□□□ -1.54
PRP40YKL012W GSH2Q08220 491 aa5.44□□□□□ -1.54
PRP40YKL012W TFB5Q3E7C1 72 aaPredicted RBP5.44□□□□□ -1.54
PRP40YKL012W COX3P00420 269 aa5.44□□□□□ -1.54
PRP40YKL012W LEU4P06208 619 aaKnown RBP5.44□□□□□ -1.54
PRP40YKL012W PPZ1P26570 692 aa5.44□□□□□ -1.54
PRP40YKL012W SPC34P36131 295 aa5.44□□□□□ -1.54
PRP40YKL012W PCA1P38360 1216 aa5.44□□□□□ -1.54
PRP40YKL012W YMR124WP39523 943 aaKnown RBP5.44□□□□□ -1.54
PRP40YKL012W CHS6P40955 746 aa5.44□□□□□ -1.54
PRP40YKL012W SLD5Q03406 294 aa5.44□□□□□ -1.54
PRP40YKL012W ATX2Q12067 313 aa5.44□□□□□ -1.54
PRP40YKL012W PDE2P06776 526 aa5.43□□□□□ -1.54
PRP40YKL012W RAD24P32641 659 aa5.43□□□□□ -1.54
PRP40YKL012W SOR1P35497 357 aaKnown RBP5.43□□□□□ -1.54
PRP40YKL012W SCO2P38072 301 aa5.43□□□□□ -1.54
PRP40YKL012W RRN10P38204 145 aa5.43□□□□□ -1.54
PRP40YKL012W SOR2Q07786 357 aa5.43□□□□□ -1.54
PRP40YKL012W THI20Q08224 551 aa5.43□□□□□ -1.54
PRP40YKL012W ADE4P04046 510 aaKnown RBP5.42□□□□□ -1.54
PRP40YKL012W YER190C-BP0CX94 160 aa5.42□□□□□ -1.54
PRP40YKL012W YEL077W-AP0CX95 160 aa5.42□□□□□ -1.54
PRP40YKL012W YGR296C-BP0CX96 160 aa5.42□□□□□ -1.54
PRP40YKL012W YPL283W-BP0CX97 160 aa5.42□□□□□ -1.54
PRP40YKL012W YPR204C-AP0CX98 160 aa5.42□□□□□ -1.54
PRP40YKL012W DAL5P15365 543 aa5.42□□□□□ -1.54
PRP40YKL012W NIP1P32497 812 aaKnown RBP5.42□□□□□ -1.54
PRP40YKL012W CSM2P40465 213 aa5.42□□□□□ -1.54
PRP40YKL012W SCD6P45978 349 aaKnown RBP RIP-Chip data5.42□□□□□ -1.54 RIP-Chip
PRP40YKL012W SAM50P53969 484 aa5.42□□□□□ -1.54
PRP40YKL012W RPL15BP54780 204 aaPredicted RBP5.42□□□□□ -1.54
PRP40YKL012W YFH1Q07540 174 aa5.42□□□□□ -1.54
PRP40YKL012W PML1Q07930 204 aaPredicted RBP5.42□□□□□ -1.54
PRP40YKL012W RKM5Q12367 367 aa5.42□□□□□ -1.54
PRP40YKL012W SWR1Q05471 1514 aa5.42□□□□□ -1.54
PRP40YKL012W ALG1P16661 449 aa5.42□□□□□ -1.54
PRP40YKL012W OSH3P38713 996 aaKnown RBP5.42□□□□□ -1.54
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms