RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	SIL1	Q08199	421 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	RDR1	Q08904	546 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	RAD61	Q99359	647 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	CNA1	P23287	553 aa		4.73	□□□□□ -1.65
CAF16	YFL028C	RML2	P32611	393 aa		4.73	□□□□□ -1.65
CAF16	YFL028C	PEX2	P32800	271 aa		4.73	□□□□□ -1.65
CAF16	YFL028C	YME2	P32843	850 aa		4.73	□□□□□ -1.65
CAF16	YFL028C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.73	□□□□□ -1.65	not detected
CAF16	YFL028C	RXT2	P38255	430 aa		4.73	□□□□□ -1.65
CAF16	YFL028C	GDI1	P39958	451 aa	Known RBP	4.73	□□□□□ -1.65
CAF16	YFL028C	HXT9	P40885	567 aa		4.73	□□□□□ -1.65
CAF16	YFL028C	CAK1	P43568	368 aa	Predicted RBP	4.73	□□□□□ -1.65
CAF16	YFL028C	NMD5	P46970	1048 aa		4.73	□□□□□ -1.65
CAF16	YFL028C	SMM1	P53720	384 aa	Known RBP	4.73	□□□□□ -1.65
CAF16	YFL028C	RSC9	Q03124	581 aa		4.73	□□□□□ -1.65
CAF16	YFL028C	SOV1	Q04748	898 aa		4.73	□□□□□ -1.65
CAF16	YFL028C	THP1	Q08231	455 aa		4.73	□□□□□ -1.65
CAF16	YFL028C	GPM3	Q12326	303 aa		4.73	□□□□□ -1.65
CAF16	YFL028C	PEP4	P07267	405 aa	Known RBP	4.72	□□□□□ -1.65
CAF16	YFL028C	PRP2	P20095	876 aa	Predicted RBP	4.72	□□□□□ -1.65
CAF16	YFL028C	CPR2	P23285	205 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	MBR1	P23493	339 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	SPB1	P25582	841 aa	Predicted RBP	4.72	□□□□□ -1.65
CAF16	YFL028C	YIM1	P28625	365 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	PRO3	P32263	286 aa	Known RBP	4.72	□□□□□ -1.65
CAF16	YFL028C	ANP1	P32629	500 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	MYO3	P36006	1272 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	THI2	P38141	450 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	MBB1	P39534	108 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	TIF4631	P39935	952 aa	Known RBP	4.72	□□□□□ -1.65
CAF16	YFL028C	SNO3	P43544	222 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	ALK1	P43633	760 aa	Known RBP	4.72	□□□□□ -1.65
CAF16	YFL028C	VPS25	P47142	202 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	PKP2	P53170	491 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	IDP3	P53982	420 aa	Known RBP	4.72	□□□□□ -1.65
CAF16	YFL028C	ARP10	Q04549	284 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	DON1	Q05610	365 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	NCE102	Q12207	173 aa	RIP-Chip data	4.72	□□□□□ -1.65	not detected
CAF16	YFL028C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
CAF16	YFL028C	CTF3	Q12748	733 aa		4.72	□□□□□ -1.65
CAF16	YFL028C	TPM1	P17536	199 aa	Known RBP	4.71	□□□□□ -1.66
CAF16	YFL028C	SRV2	P17555	526 aa	Known RBP	4.71	□□□□□ -1.66
CAF16	YFL028C	IDH2	P28241	369 aa	Known RBP	4.71	□□□□□ -1.66
CAF16	YFL028C	RAD14	P28519	371 aa		4.71	□□□□□ -1.66
CAF16	YFL028C	AFG1	P32317	509 aa		4.71	□□□□□ -1.66
CAF16	YFL028C	SHP1	P34223	423 aa		4.71	□□□□□ -1.66
CAF16	YFL028C	YKL023W	P36103	277 aa	Known RBP	4.71	□□□□□ -1.66
CAF16	YFL028C	RRT2	P38332	387 aa		4.71	□□□□□ -1.66
CAF16	YFL028C	ULP2	P40537	1034 aa	Predicted RBP	4.71	□□□□□ -1.66
CAF16	YFL028C	VMA13	P41807	478 aa	Known RBP	4.71	□□□□□ -1.66
CAF16	YFL028C	ATG27	P46989	271 aa		4.71	□□□□□ -1.66
CAF16	YFL028C	YGR149W	P48236	432 aa		4.71	□□□□□ -1.66
CAF16	YFL028C	YGL108C	P53139	140 aa		4.71	□□□□□ -1.66
CAF16	YFL028C	COP1	P53622	1201 aa	Known RBP	4.71	□□□□□ -1.66
CAF16	YFL028C	RRP45	Q05636	305 aa	Known RBP	4.71	□□□□□ -1.66
CAF16	YFL028C	BNA4	P38169	460 aa		4.7	□□□□□ -1.66
CAF16	YFL028C	NTC20	P38302	140 aa	Predicted RBP	4.7	□□□□□ -1.66
CAF16	YFL028C	FLO5	P38894	1075 aa		4.7	□□□□□ -1.66
CAF16	YFL028C	SEC28	P40509	296 aa	Known RBP	4.7	□□□□□ -1.66
CAF16	YFL028C	YPT11	P48559	417 aa		4.7	□□□□□ -1.66
CAF16	YFL028C	YGL138C	P53122	345 aa		4.7	□□□□□ -1.66
CAF16	YFL028C	SOL4	P53315	255 aa		4.7	□□□□□ -1.66
CAF16	YFL028C	BUD32	P53323	261 aa		4.7	□□□□□ -1.66
CAF16	YFL028C	SHR3	Q02774	210 aa		4.7	□□□□□ -1.66
CAF16	YFL028C	VPS54	Q12071	889 aa		4.7	□□□□□ -1.66
CAF16	YFL028C	TUS1	Q06412	1307 aa		4.7	□□□□□ -1.66
CAF16	YFL028C	SPS4	P09937	338 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	SAM2	P19358	384 aa	Known RBP	4.69	□□□□□ -1.66
CAF16	YFL028C	YAP1	P19880	650 aa	Known RBP	4.69	□□□□□ -1.66
CAF16	YFL028C	SNT1	P25357	1226 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	SCO2	P38072	301 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	YHR210C	P38893	341 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	CSM2	P40465	213 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	EFM4	P40516	257 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	YNL234W	P53857	426 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	ERG13	P54839	491 aa	Known RBP	4.69	□□□□□ -1.66
CAF16	YFL028C	YPL014W	Q02606	381 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	PEX25	Q02969	394 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	CAC2	Q04199	468 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	MYO5	Q04439	1219 aa	Known RBP	4.69	□□□□□ -1.66
CAF16	YFL028C	HEL2	Q05580	639 aa	Known RBP	4.69	□□□□□ -1.66
CAF16	YFL028C	POS5	Q06892	414 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	SPE3	Q12074	293 aa	Known RBP	4.69	□□□□□ -1.66
CAF16	YFL028C	YLR112W	Q12130	139 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	CRC1	Q12289	327 aa		4.69	□□□□□ -1.66
CAF16	YFL028C	MYO1	P08964	1928 aa		4.68	□□□□□ -1.66
CAF16	YFL028C	PGK1	P00560	416 aa	Known RBP	4.68	□□□□□ -1.66
CAF16	YFL028C	RAD52	P06778	471 aa	Known RBP	4.68	□□□□□ -1.66
CAF16	YFL028C	RNR2	P09938	399 aa	Known RBP	4.68	□□□□□ -1.66
CAF16	YFL028C	PEP5	P12868	1029 aa		4.68	□□□□□ -1.66
CAF16	YFL028C	MAK31	P23059	88 aa		4.68	□□□□□ -1.66
CAF16	YFL028C	RRP7	P25368	297 aa	Predicted RBP	4.68	□□□□□ -1.66
CAF16	YFL028C	ARA1	P38115	344 aa		4.68	□□□□□ -1.66
CAF16	YFL028C	TCM62	P38228	572 aa	Known RBP	4.68	□□□□□ -1.66
CAF16	YFL028C	SLM4	P38247	162 aa		4.68	□□□□□ -1.66
CAF16	YFL028C	LAG1	P38703	411 aa		4.68	□□□□□ -1.66
CAF16	YFL028C	YIL024C	P40543	189 aa		4.68	□□□□□ -1.66
CAF16	YFL028C	FMS1	P50264	508 aa		4.68	□□□□□ -1.66
CAF16	YFL028C	OCA1	P50946	238 aa	Predicted RBP	4.68	□□□□□ -1.66
CAF16	YFL028C	CUL3	P53202	744 aa		4.68	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 371.9 ms