RNA–Protein interactions for RNA: YOR048C

RAT1, Transcript of Nuclear 5' to 3' single-stranded RNA exonuclease, yeast

Gene RAT1, Length 3,021 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RAT1	YOR048C	TRM10	Q12400	293 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	DCP1	Q12517	231 aa	Predicted RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	MHF2	Q3E829	80 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	RPS9A	O13516	197 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	ATP4	P05626	244 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	UNG1	P12887	359 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	ARF2	P19146	181 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	ERG6	P25087	383 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	COX13	P32799	129 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	IMP3	P32899	183 aa	Predicted RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	DOM34	P33309	386 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	DUR3	P33413	735 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	ADD66	P36040	267 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	KTR4	P38131	464 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	RCY1	P39531	840 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	PSF2	P40359	213 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	SSU1	P41930	458 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	IMD3	P50095	523 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	DIA3	P52290	468 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	PIR3	Q03180	325 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	UGO1	Q03327	502 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	RSC3	Q06639	885 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	MDM36	Q06820	579 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	YDL121C	Q07541	149 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	ACF2	Q12168	779 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	LPX1	Q12405	387 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	HTZ1	Q12692	134 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	MED11	Q99278	115 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	SIR3	P06701	978 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	PRP21	P32524	280 aa	Predicted RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	UTP30	P36144	274 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	APE3	P37302	537 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	MDE1	P47095	244 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	5.18	□□□□□ -1.58	not detected
RAT1	YOR048C	RSC4	Q02206	625 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	YDR124W	Q04608	324 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	RRP45	Q05636	305 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	YPL245W	Q12179	454 aa	Known RBP	5.18	□□□□□ -1.58
RAT1	YOR048C	YDR061W	Q12298	539 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	YOL159C-A	Q3E769	90 aa		5.18	□□□□□ -1.58
RAT1	YOR048C	PBS2	P08018	668 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	SCD5	P34758	872 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	YKR023W	P36119	530 aa	Known RBP	5.17	□□□□□ -1.58
RAT1	YOR048C	ARN2	P38724	620 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	TIM17	P39515	158 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	FHL1	P39521	936 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	MPM1	P40364	252 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	ALR2	P43553	858 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	DLD2	P46681	530 aa	Known RBP	5.17	□□□□□ -1.58
RAT1	YOR048C	SNZ1	Q03148	297 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	NHP10	Q03435	203 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	EFR3	Q03653	782 aa	Known RBP	5.17	□□□□□ -1.58
RAT1	YOR048C	ECM22	Q05958	814 aa	Predicted RBP	5.17	□□□□□ -1.58
RAT1	YOR048C	CDC31	P06704	161 aa	Known RBP	5.17	□□□□□ -1.58
RAT1	YOR048C	TOP3	P13099	656 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	KSS1	P14681	368 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	CAF4	P36130	643 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	APT2	P36973	181 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	IPI1	P38803	334 aa	Predicted RBP	5.17	□□□□□ -1.58
RAT1	YOR048C	IPT1	P38954	527 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	GAT1	P43574	510 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	YAF9	P53930	226 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	ARP10	Q04549	284 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	LDB18	Q07887	179 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	DCI1	Q08558	271 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	ATG29	Q12092	213 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	LCB4	Q12246	624 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	MHF1	Q3E835	90 aa		5.17	□□□□□ -1.58
RAT1	YOR048C	PRI2	P20457	528 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	SAR1	P20606	190 aa	Known RBP	5.16	□□□□□ -1.58
RAT1	YOR048C	OCA4	P25366	362 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	CAT2	P32796	670 aa	Known RBP	5.16	□□□□□ -1.58
RAT1	YOR048C	CBP4	P37267	147 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	YBR241C	P38142	488 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	SEC28	P40509	296 aa	Known RBP	5.16	□□□□□ -1.58
RAT1	YOR048C	QRI7	P43122	407 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	PRP24	P49960	444 aa	Known RBP	5.16	□□□□□ -1.58
RAT1	YOR048C	RTS3	P53289	263 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	CLU1	Q03690	1277 aa	Known RBP	5.16	□□□□□ -1.58
RAT1	YOR048C	YLR345W	Q06137	509 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	HTA2	P04912	132 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	HMG2	P12684	1045 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	DAP2	P18962	818 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	DBF2	P22204	572 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	SGV1	P23293	657 aa	Known RBP	5.16	□□□□□ -1.58
RAT1	YOR048C	CYS3	P31373	394 aa	Known RBP	5.16	□□□□□ -1.58
RAT1	YOR048C	MSN2	P33748	704 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	YBR225W	P38321	900 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	YKE4	P40544	346 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	HOC1	P47124	396 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	COG1	P53079	417 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	CPR8	P53728	308 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	DBP6	P53734	629 aa	Known RBP	5.16	□□□□□ -1.58
RAT1	YOR048C	YNL143C	P53908	130 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	YPL119C-A	Q3E751	87 aa		5.16	□□□□□ -1.58
RAT1	YOR048C	GPH1	P06738	902 aa	Known RBP	5.15	□□□□□ -1.58
RAT1	YOR048C	STE3	P06783	470 aa		5.15	□□□□□ -1.58
RAT1	YOR048C	RSR1	P13856	272 aa		5.15	□□□□□ -1.58
RAT1	YOR048C	GPT2	P36148	743 aa		5.15	□□□□□ -1.58
RAT1	YOR048C	SRP72	P38688	640 aa	Known RBP	5.15	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms