RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	BAR1	P12630	587 aa		4.82	□□□□□ -1.64
RRP40	YOL142W	THR4	P16120	514 aa	Known RBP	4.82	□□□□□ -1.64
RRP40	YOL142W	ALG1	P16661	449 aa		4.82	□□□□□ -1.64
RRP40	YOL142W	RDS1	P25611	832 aa		4.82	□□□□□ -1.64
RRP40	YOL142W	RPN2	P32565	945 aa	Known RBP	4.82	□□□□□ -1.64
RRP40	YOL142W	SAS3	P34218	831 aa		4.82	□□□□□ -1.64
RRP40	YOL142W	UBP11	P36026	717 aa		4.82	□□□□□ -1.64
RRP40	YOL142W	GAA1	P39012	614 aa		4.82	□□□□□ -1.64
RRP40	YOL142W	ARC1	P46672	376 aa	Known RBP	4.82	□□□□□ -1.64
RRP40	YOL142W	HOS2	P53096	452 aa	Predicted RBP	4.82	□□□□□ -1.64
RRP40	YOL142W	BSC5	P53755	489 aa		4.82	□□□□□ -1.64
RRP40	YOL142W	BNI5	P53890	448 aa	Known RBP	4.82	□□□□□ -1.64
RRP40	YOL142W	SLD5	Q03406	294 aa		4.82	□□□□□ -1.64
RRP40	YOL142W	YDR415C	Q04033	374 aa	Predicted RBP	4.82	□□□□□ -1.64
RRP40	YOL142W	AIM33	Q04516	312 aa		4.82	□□□□□ -1.64
RRP40	YOL142W	SMD2	Q06217	110 aa	Known RBP	4.82	□□□□□ -1.64
RRP40	YOL142W	NKP1	Q12493	238 aa		4.82	□□□□□ -1.64
RRP40	YOL142W	ARP6	Q12509	438 aa		4.82	□□□□□ -1.64
RRP40	YOL142W	TY1B-A	O13527	1196 aa	Known RBP	4.81	□□□□□ -1.64
RRP40	YOL142W	SEC1	P30619	724 aa	Known RBP	4.81	□□□□□ -1.64
RRP40	YOL142W	REG2	P38232	338 aa		4.81	□□□□□ -1.64
RRP40	YOL142W	UBA4	P38820	440 aa		4.81	□□□□□ -1.64
RRP40	YOL142W	ELO1	P39540	310 aa		4.81	□□□□□ -1.64
RRP40	YOL142W	AFG3	P39925	761 aa		4.81	□□□□□ -1.64
RRP40	YOL142W	RGI2	P40188	164 aa		4.81	□□□□□ -1.64
RRP40	YOL142W	HYR1	P40581	163 aa	Known RBP	4.81	□□□□□ -1.64
RRP40	YOL142W	SGM1	P47166	707 aa		4.81	□□□□□ -1.64
RRP40	YOL142W	DIA3	P52290	468 aa		4.81	□□□□□ -1.64
RRP40	YOL142W	RAD30	Q04049	632 aa		4.81	□□□□□ -1.64
RRP40	YOL142W	YMR317W	Q04893	1140 aa		4.81	□□□□□ -1.64
RRP40	YOL142W	TIP41	Q12199	356 aa		4.81	□□□□□ -1.64
RRP40	YOL142W	SKM1	Q12469	655 aa		4.81	□□□□□ -1.64
RRP40	YOL142W	YLR422W	Q06409	1932 aa		4.8	□□□□□ -1.64
RRP40	YOL142W	CDC24	P11433	854 aa	Predicted RBP	4.8	□□□□□ -1.64
RRP40	YOL142W	POX1	P13711	748 aa		4.8	□□□□□ -1.64
RRP40	YOL142W	VMA16	P23968	213 aa		4.8	□□□□□ -1.64
RRP40	YOL142W	MCM4	P30665	933 aa	Known RBP	4.8	□□□□□ -1.64
RRP40	YOL142W	TSC10	P38342	320 aa		4.8	□□□□□ -1.64
RRP40	YOL142W	GPD2	P41911	440 aa	Known RBP	4.8	□□□□□ -1.64
RRP40	YOL142W	CUL3	P53202	744 aa		4.8	□□□□□ -1.64
RRP40	YOL142W	MEP3	P53390	489 aa		4.8	□□□□□ -1.64
RRP40	YOL142W	HST1	P53685	503 aa		4.8	□□□□□ -1.64
RRP40	YOL142W	EMI2	Q04409	500 aa	Known RBP	4.8	□□□□□ -1.64
RRP40	YOL142W	OPY2	Q06810	360 aa		4.8	□□□□□ -1.64
RRP40	YOL142W	RPS10A	Q08745	105 aa	Predicted RBP	4.8	□□□□□ -1.64
RRP40	YOL142W	RDR1	Q08904	546 aa		4.8	□□□□□ -1.64
RRP40	YOL142W	TCO89	Q08921	799 aa		4.8	□□□□□ -1.64
RRP40	YOL142W	TAO3	P40468	2376 aa		4.79	□□□□□ -1.64
RRP40	YOL142W	ILV1	P00927	576 aa	Known RBP	4.79	□□□□□ -1.64
RRP40	YOL142W	FRS2	P15625	503 aa	Known RBP	4.79	□□□□□ -1.64
RRP40	YOL142W	SSH4	P32343	579 aa		4.79	□□□□□ -1.64
RRP40	YOL142W	PAH1	P32567	862 aa		4.79	□□□□□ -1.64
RRP40	YOL142W	IME2	P32581	645 aa		4.79	□□□□□ -1.64
RRP40	YOL142W	TRS65	P32893	560 aa		4.79	□□□□□ -1.64
RRP40	YOL142W	RFT1	P38206	574 aa	Predicted RBP	4.79	□□□□□ -1.64
RRP40	YOL142W	DBP8	P38719	431 aa		4.79	□□□□□ -1.64
RRP40	YOL142W	RPS10B	P46784	105 aa	Known RBP	4.79	□□□□□ -1.64
RRP40	YOL142W	CUE3	P53137	624 aa	Known RBP	4.79	□□□□□ -1.64
RRP40	YOL142W	YSA1	Q01976	231 aa		4.79	□□□□□ -1.64
RRP40	YOL142W	YMR018W	Q04364	514 aa		4.79	□□□□□ -1.64
RRP40	YOL142W	LEU9	Q12166	604 aa	Known RBP	4.79	□□□□□ -1.64
RRP40	YOL142W	ADH7	P25377	361 aa		4.78	□□□□□ -1.64
RRP40	YOL142W	NOC2	P39744	710 aa	Known RBP	4.78	□□□□□ -1.64
RRP40	YOL142W	AZF1	P41696	914 aa		4.78	□□□□□ -1.64
RRP40	YOL142W	YGL260W	P53056	76 aa		4.78	□□□□□ -1.64
RRP40	YOL142W	CSM3	Q04659	317 aa		4.78	□□□□□ -1.64
RRP40	YOL142W	FUS2	Q05670	677 aa		4.78	□□□□□ -1.64
RRP40	YOL142W	MMR1	Q06324	491 aa		4.78	□□□□□ -1.64
RRP40	YOL142W	GRC3	Q07845	632 aa		4.78	□□□□□ -1.64
RRP40	YOL142W	NBL1	Q3E7Y6	73 aa		4.78	□□□□□ -1.64
RRP40	YOL142W	HIS4	P00815	799 aa	Known RBP	4.77	□□□□□ -1.65
RRP40	YOL142W	ARG81	P05085	880 aa		4.77	□□□□□ -1.65
RRP40	YOL142W	PUT2	P07275	575 aa		4.77	□□□□□ -1.65
RRP40	YOL142W	GLN3	P18494	730 aa		4.77	□□□□□ -1.65
RRP40	YOL142W	CKA2	P19454	339 aa		4.77	□□□□□ -1.65
RRP40	YOL142W	BMH1	P29311	267 aa	Known RBP	4.77	□□□□□ -1.65
RRP40	YOL142W	PHD1	P36093	366 aa		4.77	□□□□□ -1.65
RRP40	YOL142W	SPC34	P36131	295 aa		4.77	□□□□□ -1.65
RRP40	YOL142W	AGP2	P38090	596 aa		4.77	□□□□□ -1.65
RRP40	YOL142W	FIS1	P40515	155 aa		4.77	□□□□□ -1.65
RRP40	YOL142W	ERG26	P53199	349 aa	Known RBP	4.77	□□□□□ -1.65
RRP40	YOL142W	ECM30	Q06673	1274 aa		4.77	□□□□□ -1.65
RRP40	YOL142W	MAS2	P11914	482 aa		4.76	□□□□□ -1.65
RRP40	YOL142W	CLN3	P13365	580 aa		4.76	□□□□□ -1.65
RRP40	YOL142W	ISY1	P21374	235 aa	Predicted RBP	4.76	□□□□□ -1.65
RRP40	YOL142W	MCM10	P32354	571 aa		4.76	□□□□□ -1.65
RRP40	YOL142W	TVP38	P36164	337 aa		4.76	□□□□□ -1.65
RRP40	YOL142W	RIM2	P38127	377 aa		4.76	□□□□□ -1.65
RRP40	YOL142W	HMF1	P40037	129 aa	Known RBP	4.76	□□□□□ -1.65
RRP40	YOL142W	GUF1	P46943	645 aa		4.76	□□□□□ -1.65
RRP40	YOL142W	PYK2	P52489	506 aa	Known RBP	4.76	□□□□□ -1.65
RRP40	YOL142W	ZPR1	P53303	486 aa	Known RBP	4.76	□□□□□ -1.65
RRP40	YOL142W	RTC4	P53850	401 aa		4.76	□□□□□ -1.65
RRP40	YOL142W	PGA2	P53903	129 aa		4.76	□□□□□ -1.65
RRP40	YOL142W	TEN1	Q07921	160 aa		4.76	□□□□□ -1.65
RRP40	YOL142W	SMC6	Q12749	1114 aa		4.76	□□□□□ -1.65
RRP40	YOL142W	DDP1	Q99321	188 aa	Known RBP	4.76	□□□□□ -1.65
RRP40	YOL142W	FOB1	O13329	566 aa		4.75	□□□□□ -1.65
RRP40	YOL142W	RPL22A	P05749	121 aa	Known RBP	4.75	□□□□□ -1.65
RRP40	YOL142W	MSP1	P28737	362 aa		4.75	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 16.7 ms