RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX4	YMR067C	ISY1	P21374	235 aa	Predicted RBP	2.76	□□□□□ -1.97
UBX4	YMR067C	NAM9	P27929	486 aa		2.76	□□□□□ -1.97
UBX4	YMR067C	YIM1	P28625	365 aa		2.76	□□□□□ -1.97
UBX4	YMR067C	SSH4	P32343	579 aa		2.76	□□□□□ -1.97
UBX4	YMR067C	SPR1	P32603	445 aa		2.76	□□□□□ -1.97
UBX4	YMR067C	MUM2	P38236	366 aa		2.76	□□□□□ -1.97
UBX4	YMR067C	MSR1	P38714	643 aa		2.76	□□□□□ -1.97
UBX4	YMR067C	FAU1	P40099	211 aa		2.76	□□□□□ -1.97
UBX4	YMR067C	REE1	P40893	198 aa		2.76	□□□□□ -1.97
UBX4	YMR067C	LYS14	P40971	790 aa		2.76	□□□□□ -1.97
UBX4	YMR067C	YFL067W	P43537	175 aa		2.76	□□□□□ -1.97
UBX4	YMR067C	DUO1	P53168	247 aa	Known RBP	2.76	□□□□□ -1.97
UBX4	YMR067C	MEP3	P53390	489 aa		2.76	□□□□□ -1.97
UBX4	YMR067C	OGG1	P53397	376 aa	Predicted RBP	2.76	□□□□□ -1.97
UBX4	YMR067C	PBA1	Q05778	276 aa		2.76	□□□□□ -1.97
UBX4	YMR067C	EST1	P17214	699 aa	Predicted RBP	2.75	□□□□□ -1.97
UBX4	YMR067C	ELO2	P25358	347 aa		2.75	□□□□□ -1.97
UBX4	YMR067C	HXT1	P32465	570 aa		2.75	□□□□□ -1.97
UBX4	YMR067C	RSM22	P36056	628 aa		2.75	□□□□□ -1.97
UBX4	YMR067C	PTH1	P38876	190 aa	Known RBP	2.75	□□□□□ -1.97
UBX4	YMR067C	IMD4	P50094	524 aa	Known RBP	2.75	□□□□□ -1.97
UBX4	YMR067C	IPI3	P53877	555 aa		2.75	□□□□□ -1.97
UBX4	YMR067C	IBD2	P53892	351 aa		2.75	□□□□□ -1.97
UBX4	YMR067C	PIR3	Q03180	325 aa		2.75	□□□□□ -1.97
UBX4	YMR067C	NGL3	Q03210	505 aa		2.75	□□□□□ -1.97
UBX4	YMR067C	RAV1	P47104	1357 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	SEM1	O94742	89 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	PRD1	P25375	712 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	BUB3	P26449	341 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	NDI1	P32340	513 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	TCD2	P36101	447 aa	Known RBP	2.74	□□□□□ -1.97
UBX4	YMR067C	NOP4	P37838	685 aa	Known RBP	2.74	□□□□□ -1.97
UBX4	YMR067C	MTC6	P38849	526 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	ERP2	P39704	215 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	YIL067C	P40514	678 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	GCD10	P41814	478 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	RRT5	P43607	289 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	LCL3	P53153	274 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	YGR066C	P53242	292 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	ZPR1	P53303	486 aa	Known RBP	2.74	□□□□□ -1.97
UBX4	YMR067C	ARK1	P53974	638 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	MHR1	Q06630	226 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	YJR112W-A	Q3E743	109 aa		2.74	□□□□□ -1.97
UBX4	YMR067C	COR1	P07256	457 aa		2.73	□□□□□ -1.97
UBX4	YMR067C	SEC53	P07283	254 aa	Known RBP	2.73	□□□□□ -1.97
UBX4	YMR067C	TRX2	P22803	104 aa	Known RBP	2.73	□□□□□ -1.97
UBX4	YMR067C	PAH1	P32567	862 aa		2.73	□□□□□ -1.97
UBX4	YMR067C	SDH3	P33421	198 aa		2.73	□□□□□ -1.97
UBX4	YMR067C	FRE2	P36033	711 aa		2.73	□□□□□ -1.97
UBX4	YMR067C	SRO77	P38163	1010 aa		2.73	□□□□□ -1.97
UBX4	YMR067C	RRG7	Q08774	242 aa	Predicted RBP	2.73	□□□□□ -1.97
UBX4	YMR067C	RCN2	Q12044	265 aa		2.73	□□□□□ -1.97
UBX4	YMR067C	TMS1	Q12116	473 aa		2.73	□□□□□ -1.97
UBX4	YMR067C	RLM1	Q12224	676 aa		2.73	□□□□□ -1.97
UBX4	YMR067C	MES1	P00958	751 aa	Known RBP	2.72	□□□□□ -1.97
UBX4	YMR067C	GLC7	P32598	312 aa	Known RBP	2.72	□□□□□ -1.97
UBX4	YMR067C	PRS1	P32895	427 aa	Known RBP	2.72	□□□□□ -1.97
UBX4	YMR067C	NAT2	P37293	288 aa		2.72	□□□□□ -1.97
UBX4	YMR067C	AVT4	P50944	713 aa		2.72	□□□□□ -1.97
UBX4	YMR067C	THP3	Q12049	470 aa	Known RBP	2.72	□□□□□ -1.97
UBX4	YMR067C	RKM5	Q12367	367 aa		2.72	□□□□□ -1.97
UBX4	YMR067C	AVL9	Q12500	764 aa		2.72	□□□□□ -1.97
UBX4	YMR067C	CHS1	P08004	1131 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	CPR4	P25334	318 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	MCM10	P32354	571 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	ATP11	P32453	318 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	CBP4	P37267	147 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	MBB1	P39534	108 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	NOP16	P40007	231 aa	Known RBP	2.71	□□□□□ -1.98
UBX4	YMR067C	ART5	P53244	586 aa	Known RBP	2.71	□□□□□ -1.98
UBX4	YMR067C	RTS3	P53289	263 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	SLG1	P54867	378 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	ODC1	Q03028	310 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	SOV1	Q04748	898 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	CTI6	Q08923	506 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	YLR108C	Q12259	485 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	HRT3	Q12347	344 aa		2.71	□□□□□ -1.98
UBX4	YMR067C	LEU4	P06208	619 aa	Known RBP	2.7	□□□□□ -1.98
UBX4	YMR067C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	2.7	□□□□□ -1.98	not detected
UBX4	YMR067C	NAT1	P12945	854 aa	Known RBP	2.7	□□□□□ -1.98
UBX4	YMR067C	SPS22	P25380	463 aa		2.7	□□□□□ -1.98
UBX4	YMR067C	WBP1	P33767	430 aa	Known RBP	2.7	□□□□□ -1.98
UBX4	YMR067C	MUD2	P36084	527 aa	Known RBP	2.7	□□□□□ -1.98
UBX4	YMR067C	SSN8	P47821	323 aa		2.7	□□□□□ -1.98
UBX4	YMR067C	POP6	P53218	158 aa		2.7	□□□□□ -1.98
UBX4	YMR067C	YLR152C	P54072	576 aa		2.7	□□□□□ -1.98
UBX4	YMR067C	VPS38	Q05919	439 aa		2.7	□□□□□ -1.98
UBX4	YMR067C	TMC1	Q08422	150 aa	Predicted RBP	2.7	□□□□□ -1.98
UBX4	YMR067C	SOD1	P00445	154 aa	Known RBP	2.69	□□□□□ -1.98
UBX4	YMR067C	MRE11	P32829	692 aa		2.69	□□□□□ -1.98
UBX4	YMR067C	MIX23	P38162	196 aa		2.69	□□□□□ -1.98
UBX4	YMR067C	REG2	P38232	338 aa		2.69	□□□□□ -1.98
UBX4	YMR067C	SYG1	P40528	902 aa		2.69	□□□□□ -1.98
UBX4	YMR067C	TOF1	P53840	1238 aa		2.69	□□□□□ -1.98
UBX4	YMR067C	PNG1	Q02890	363 aa		2.69	□□□□□ -1.98
UBX4	YMR067C	MRP51	Q02950	344 aa		2.69	□□□□□ -1.98
UBX4	YMR067C	MFB1	Q04922	465 aa		2.69	□□□□□ -1.98
UBX4	YMR067C	MRPL35	Q06678	367 aa		2.69	□□□□□ -1.98
UBX4	YMR067C	TSR1	Q07381	788 aa	Known RBP	2.69	□□□□□ -1.98
UBX4	YMR067C	YPL199C	Q08954	240 aa		2.69	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 17 ms