RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 IBTKQ9P2D0 1353 aaPredicted RBP7.92□□□□□ -1.14
VPS50-215ENST00000480943 SCN4AP35499 1836 aa7.92□□□□□ -1.14
VPS50-215ENST00000480943 P4HBP07237 508 aaKnown RBP7.91□□□□□ -1.14
VPS50-215ENST00000480943 NFICP08651 508 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 LMNB1P20700 586 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 AIMP1Q12904 312 aaKnown RBP7.91□□□□□ -1.14
VPS50-215ENST00000480943 SUSD4Q5VX71 490 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 LRP10Q7Z4F1 713 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 SULF2Q8IWU5 870 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 C3orf58Q8NDZ4 430 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 NYXQ9GZU5 481 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 SEMA6CQ9H3T2 930 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 GSX1Q9H4S2 264 aaPredicted RBP7.91□□□□□ -1.14
VPS50-215ENST00000480943 ACSS3Q9H6R3 686 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 KRT82Q9NSB4 513 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 PPP1R9AQ9ULJ8 1098 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 KDM2BQ8NHM5 1336 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 RIC1Q4ADV7 1423 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 LRRC37AA6NMS7 1700 aa7.91□□□□□ -1.14
VPS50-215ENST00000480943 CEP350Q5VT06 3117 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 NPIPB6E9PJ23 425 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 TMPRSS2O15393 492 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 ANP32CO43423 234 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 NTSR2O95665 410 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 PDIA4P13667 645 aaKnown RBP7.9□□□□□ -1.14
VPS50-215ENST00000480943 NPR1P16066 1061 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 ANGEL2Q5VTE6 544 aaKnown RBP7.9□□□□□ -1.14
VPS50-215ENST00000480943 COPS6Q7L5N1 327 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 ZNF34Q8IZ26 560 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 XAGE3Q8WTP9 111 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 KCNB2Q92953 911 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 WDR89Q96FK6 387 aaPredicted RBP7.9□□□□□ -1.14
VPS50-215ENST00000480943 C20orf173Q96LM9 149 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 TAOK3Q9H2K8 898 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 DDX21Q9NR30 783 aaKnown RBP eCLIP7.9□□□□□ -1.14
VPS50-215ENST00000480943 CHPF2Q9P2E5 772 aa7.9□□□□□ -1.14
VPS50-215ENST00000480943 LTBP3Q9NS15 1303 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 KLRG2A4D1S0 409 aaPredicted RBP7.89□□□□□ -1.15
VPS50-215ENST00000480943 GIPC1O14908 333 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 ZNF862O60290 1169 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 SLFN14P0C7P3 912 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 GNAI1P63096 354 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 ID3Q02535 119 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 KIF4BQ2VIQ3 1234 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 PARP10Q53GL7 1025 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 CCDC93Q567U6 631 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 SOGA3Q5TF21 947 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 MPZL3Q6UWV2 235 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 OLFM4Q6UX06 510 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 PPP1R42Q7Z4L9 355 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 PDZD3Q86UT5 571 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 C16orf71Q8IYS4 520 aaPredicted RBP7.89□□□□□ -1.15
VPS50-215ENST00000480943 FBXO15Q8NCQ5 510 aaPredicted RBP7.89□□□□□ -1.15
VPS50-215ENST00000480943 LIN37Q96GY3 246 aaPredicted RBP7.89□□□□□ -1.15
VPS50-215ENST00000480943 OSBPL7Q9BZF2 842 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 MRS2Q9HD23 443 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 IFT57Q9NWB7 429 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 DAGLAQ9Y4D2 1042 aa7.89□□□□□ -1.15
VPS50-215ENST00000480943 FOXD2O60548 495 aaPredicted RBP7.88□□□□□ -1.15
VPS50-215ENST00000480943 HOXB7P09629 217 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 TMEM253P0C7T8 217 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 ZNF853P0CG23 659 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 NME2P22392 152 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 ARNTP27540 789 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 CALD1Q05682 793 aaKnown RBP7.88□□□□□ -1.15
VPS50-215ENST00000480943 KRTAP1-1Q07627 177 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 HSP90AB3PQ58FF7 597 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 STK35Q8TDR2 534 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 RPGRQ92834 1020 aaKnown RBP7.88□□□□□ -1.15
VPS50-215ENST00000480943 ZNF428Q96B54 188 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 EMILIN2Q9BXX0 1053 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 CEP44Q9C0F1 390 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 ATXN3LQ9H3M9 355 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 PIDD1Q9HB75 910 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 CRIM1Q9NZV1 1036 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 DBF4Q9UBU7 674 aaPredicted RBP7.88□□□□□ -1.15
VPS50-215ENST00000480943 PPM1HQ9ULR3 514 aa7.88□□□□□ -1.15
VPS50-215ENST00000480943 SNED1Q8TER0 1413 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 COL4A1P02462 1669 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 COL4A5P29400 1685 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 GLTPD2A6NH11 291 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 ELL2O00472 640 aaPredicted RBP7.87□□□□□ -1.15
VPS50-215ENST00000480943 TOMM70O94826 608 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 LDHBP07195 334 aaKnown RBP7.87□□□□□ -1.15
VPS50-215ENST00000480943 HSPA6P17066 643 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 SYN1P17600 705 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 ALDH1B1P30837 517 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 KCNA10Q16322 511 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 CRY2Q49AN0 593 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 MAP1SQ66K74 1059 aaPredicted RBP7.87□□□□□ -1.15
VPS50-215ENST00000480943 SND1Q7KZF4 910 aaKnown RBP eCLIP7.87□□□□□ -1.15
VPS50-215ENST00000480943 NECAB3Q96P71 396 aaPredicted RBP7.87□□□□□ -1.15
VPS50-215ENST00000480943 FANCD2OSQ96PS1 177 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 UTP14AQ9BVJ6 771 aaKnown RBP7.87□□□□□ -1.15
VPS50-215ENST00000480943 C12orf49Q9H741 205 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 CBX8Q9HC52 389 aa7.87□□□□□ -1.15
VPS50-215ENST00000480943 RNF123Q5XPI4 1314 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 TCERG1O14776 1098 aaKnown RBP7.86□□□□□ -1.15
VPS50-215ENST00000480943 FBXO24O75426 580 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 AFMP43652 599 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms