RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 AEBP2Q6ZN18 517 aaPredicted RBP33.59■■■□□ 2.97
VPS50-215ENST00000480943 CHIC1Q5VXU3 224 aa31.68■■■□□ 2.66
VPS50-215ENST00000480943 SENP3Q9H4L4 574 aaPredicted RBP29.08■■■□□ 2.25
VPS50-215ENST00000480943 PHF23Q9BUL5 403 aaPredicted RBP28.44■■■□□ 2.14
VPS50-215ENST00000480943 FOXD1Q16676 465 aa27.05■■□□□ 1.92
VPS50-215ENST00000480943 POTEDQ86YR6 584 aa26.78■■□□□ 1.88
VPS50-215ENST00000480943 MSH5O43196 834 aa25.91■■□□□ 1.74
VPS50-215ENST00000480943 PIAS4Q8N2W9 510 aaPredicted RBP25.14■■□□□ 1.62
VPS50-215ENST00000480943 PLPPR3Q6T4P5 718 aa24.51■■□□□ 1.51
VPS50-215ENST00000480943 PPP6R1Q9UPN7 881 aa24.44■■□□□ 1.5
VPS50-215ENST00000480943 ADRA2BP18089 450 aa24.35■■□□□ 1.49
VPS50-215ENST00000480943 DMRT2Q9Y5R5 561 aa22.83■■□□□ 1.25
VPS50-215ENST00000480943 CACNB1Q02641 598 aaPredicted RBP22.78■■□□□ 1.24
VPS50-215ENST00000480943 MAPK8IP2Q13387 824 aaPredicted RBP22.61■■□□□ 1.21
VPS50-215ENST00000480943 SCAF1Q9H7N4 1312 aaKnown RBP22.59■■□□□ 1.21
VPS50-215ENST00000480943 DCAF8L1A6NGE4 600 aa21.99■■□□□ 1.11
VPS50-215ENST00000480943 RNF39Q9H2S5 420 aa21.89■■□□□ 1.09
VPS50-215ENST00000480943 C1QBPQ07021 282 aaKnown RBP21.62■■□□□ 1.05
VPS50-215ENST00000480943 HOXD11P31277 338 aaPredicted RBP21.6■■□□□ 1.05
VPS50-215ENST00000480943 PPP4R3CPQ6ZMV5 832 aa21.26■□□□□ 0.99
VPS50-215ENST00000480943 RNF216Q9NWF9 866 aaPredicted RBP21.23■□□□□ 0.99
VPS50-215ENST00000480943 DNAJC5BQ9UF47 199 aa21.19■□□□□ 0.98
VPS50-215ENST00000480943 CNKSR2Q8WXI2 1034 aa21.18■□□□□ 0.98
VPS50-215ENST00000480943 POTEHQ6S545 545 aa20.85■□□□□ 0.93
VPS50-215ENST00000480943 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.65■□□□□ 0.9
VPS50-215ENST00000480943 NCBP3Q53F19 620 aaKnown RBP20.33■□□□□ 0.85
VPS50-215ENST00000480943 DSG3P32926 999 aa20.14■□□□□ 0.81
VPS50-215ENST00000480943 CAPN15O75808 1086 aa20.11■□□□□ 0.81
VPS50-215ENST00000480943 U3KPZ7 1027 aaPredicted RBP19.98■□□□□ 0.79
VPS50-215ENST00000480943 SPINK5Q9NQ38 1064 aaPredicted RBP19.94■□□□□ 0.78
VPS50-215ENST00000480943 NPM3O75607 178 aaKnown RBP19.81■□□□□ 0.76
VPS50-215ENST00000480943 APLP2Q06481 763 aa19.66■□□□□ 0.74
VPS50-215ENST00000480943 ZNF219Q9P2Y4 722 aaPredicted RBP19.56■□□□□ 0.72
VPS50-215ENST00000480943 TRHP20396 242 aaPredicted RBP19.52■□□□□ 0.72
VPS50-215ENST00000480943 RBM42Q9BTD8 480 aaKnown RBP19.46■□□□□ 0.71
VPS50-215ENST00000480943 ABCB7O75027 752 aa19.45■□□□□ 0.7
VPS50-215ENST00000480943 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.34■□□□□ 0.69
VPS50-215ENST00000480943 HNRNPUL2Q1KMD3 747 aaKnown RBP19.34■□□□□ 0.69
VPS50-215ENST00000480943 CHRDL2Q6WN34 429 aa19.28■□□□□ 0.68
VPS50-215ENST00000480943 SLC4A2P04920 1241 aa19.12■□□□□ 0.65
VPS50-215ENST00000480943 SAMD1Q6SPF0 538 aaPredicted RBP19.11■□□□□ 0.65
VPS50-215ENST00000480943 SP7Q8TDD2 431 aaPredicted RBP19.11■□□□□ 0.65
VPS50-215ENST00000480943 POLA2Q14181 598 aa18.75■□□□□ 0.59
VPS50-215ENST00000480943 AKT1S1Q96B36 256 aa18.72■□□□□ 0.59
VPS50-215ENST00000480943 HAX1O00165 279 aa18.57■□□□□ 0.56
VPS50-215ENST00000480943 PIP4P2Q8N4L2 257 aa18.56■□□□□ 0.56
VPS50-215ENST00000480943 KCNA4P22459 653 aa18.51■□□□□ 0.55
VPS50-215ENST00000480943 ZBTB12Q9Y330 459 aaPredicted RBP18.5■□□□□ 0.55
VPS50-215ENST00000480943 MYCNP04198 464 aaPredicted RBP18.48■□□□□ 0.55
VPS50-215ENST00000480943 REM2Q8IYK8 340 aaPredicted RBP18.45■□□□□ 0.54
VPS50-215ENST00000480943 FXR2P51116 673 aaKnown RBP eCLIP18.31■□□□□ 0.52
VPS50-215ENST00000480943 PITPNM1O00562 1244 aa18.24■□□□□ 0.51
VPS50-215ENST00000480943 OSCARQ8IYS5 282 aa18.16■□□□□ 0.5
VPS50-215ENST00000480943 EVX2Q03828 476 aa18.03■□□□□ 0.48
VPS50-215ENST00000480943 LHX8Q68G74 356 aa17.9■□□□□ 0.46
VPS50-215ENST00000480943 ATF5Q9Y2D1 282 aaPredicted RBP17.89■□□□□ 0.45
VPS50-215ENST00000480943 PRKAR2AP13861 404 aaKnown RBP17.8■□□□□ 0.44
VPS50-215ENST00000480943 C19orf67A6NJJ6 358 aa17.76■□□□□ 0.43
VPS50-215ENST00000480943 SPDYE2BA6NHP3 402 aa17.75■□□□□ 0.43
VPS50-215ENST00000480943 SPDYE6P0CI01 402 aa17.75■□□□□ 0.43
VPS50-215ENST00000480943 SPDYE2Q495Y8 402 aa17.75■□□□□ 0.43
VPS50-215ENST00000480943 GABBR2O75899 941 aa17.73■□□□□ 0.43
VPS50-215ENST00000480943 FOXD4L1Q9NU39 408 aa17.72■□□□□ 0.43
VPS50-215ENST00000480943 SPDYE1Q8NFV5 336 aaPredicted RBP17.7■□□□□ 0.42
VPS50-215ENST00000480943 CLEC11AQ9Y240 323 aa17.65■□□□□ 0.42
VPS50-215ENST00000480943 PLSCR2Q9NRY7 297 aa17.59■□□□□ 0.41
VPS50-215ENST00000480943 FBLN2P98095 1184 aa17.58■□□□□ 0.4
VPS50-215ENST00000480943 SLC4A1APQ9BWU0 796 aaKnown RBP17.39■□□□□ 0.37
VPS50-215ENST00000480943 CLCN6P51797 869 aa17.37■□□□□ 0.37
VPS50-215ENST00000480943 ATXN8OSP0DMR3 200 aa17.35■□□□□ 0.37
VPS50-215ENST00000480943 ZNF692Q9BU19 519 aaPredicted RBP17.34■□□□□ 0.37
VPS50-215ENST00000480943 CHADLQ6NUI6 762 aa17.3■□□□□ 0.36
VPS50-215ENST00000480943 SSUH2Q9Y2M2 353 aa17.3■□□□□ 0.36
VPS50-215ENST00000480943 PRR29P0C7W0 189 aa17.26■□□□□ 0.35
VPS50-215ENST00000480943 POTEIP0CG38 1075 aa17.23■□□□□ 0.35
VPS50-215ENST00000480943 CD44P16070 742 aaKnown RBP17.2■□□□□ 0.34
VPS50-215ENST00000480943 DCBLD2Q96PD2 775 aa17.17■□□□□ 0.34
VPS50-215ENST00000480943 MKRN4PQ13434 485 aaPredicted RBP17.05■□□□□ 0.32
VPS50-215ENST00000480943 FARP1Q9Y4F1 1045 aaPredicted RBP17.04■□□□□ 0.32
VPS50-215ENST00000480943 PABPN1Q86U42 306 aaKnown RBP eCLIP17■□□□□ 0.31
VPS50-215ENST00000480943 POTEMA6NI47 508 aa16.9■□□□□ 0.3
VPS50-215ENST00000480943 ZBTB22O15209 634 aa16.9■□□□□ 0.3
VPS50-215ENST00000480943 ZNF579Q8NAF0 562 aaKnown RBP16.89■□□□□ 0.29
VPS50-215ENST00000480943 PCDH10Q9P2E7 1040 aa16.86■□□□□ 0.29
VPS50-215ENST00000480943 OTUD5Q96G74 571 aa16.85■□□□□ 0.29
VPS50-215ENST00000480943 POTEGQ6S5H5 508 aa16.81■□□□□ 0.28
VPS50-215ENST00000480943 ZRANB1Q9UGI0 708 aa16.8■□□□□ 0.28
VPS50-215ENST00000480943 GALR2O43603 387 aaPredicted RBP16.66■□□□□ 0.26
VPS50-215ENST00000480943 POTEB2H3BUK9 544 aa16.62■□□□□ 0.25
VPS50-215ENST00000480943 PAK3O75914 559 aaPredicted RBP16.62■□□□□ 0.25
VPS50-215ENST00000480943 MAMSTRQ6ZN01 415 aa16.51■□□□□ 0.23
VPS50-215ENST00000480943 STAG3Q9UJ98 1225 aa16.5■□□□□ 0.23
VPS50-215ENST00000480943 CREBZFQ9NS37 354 aa16.47■□□□□ 0.23
VPS50-215ENST00000480943 SLC39A7Q92504 469 aa16.4■□□□□ 0.22
VPS50-215ENST00000480943 METRNQ9UJH8 293 aa16.4■□□□□ 0.22
VPS50-215ENST00000480943 C7P10643 843 aa16.39■□□□□ 0.21
VPS50-215ENST00000480943 PHF12Q96QT6 1004 aa16.39■□□□□ 0.21
VPS50-215ENST00000480943 PELP1Q8IZL8 1130 aaKnown RBP16.37■□□□□ 0.21
VPS50-215ENST00000480943 NPM1P06748 294 aaKnown RBP eCLIP16.35■□□□□ 0.21
VPS50-215ENST00000480943 ASTLQ6HA08 431 aaPredicted RBP16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms