RNA–Protein interactions for RNA: YPL042C

SSN3, Transcript of Cyclin-dependent protein kinase, yeastyeast

Gene SSN3, Length 1,668 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSN3YPL042C MRX12P47084 519 aa12.46□□□□□ -0.41
SSN3YPL042C USO1P25386 1790 aa12.46□□□□□ -0.42
SSN3YPL042C TAF8Q03750 510 aa12.45□□□□□ -0.42
SSN3YPL042C MHP1P43638 1398 aa12.44□□□□□ -0.42
SSN3YPL042C SPE2P21182 396 aa12.44□□□□□ -0.42
SSN3YPL042C RIA1P53893 1110 aa12.42□□□□□ -0.42
SSN3YPL042C DMA2P53924 522 aa12.39□□□□□ -0.43
SSN3YPL042C SCT1P32784 759 aa12.38□□□□□ -0.43
SSN3YPL042C LEU3P08638 886 aa12.35□□□□□ -0.43
SSN3YPL042C SEC3P33332 1336 aaKnown RBP12.35□□□□□ -0.43
SSN3YPL042C YNR029CP53729 429 aaKnown RBP12.34□□□□□ -0.43
SSN3YPL042C YMR196WQ04336 1088 aa12.34□□□□□ -0.43
SSN3YPL042C CHZ1P40019 153 aaPredicted RBP12.29□□□□□ -0.44
SSN3YPL042C MDG1P53885 366 aa12.29□□□□□ -0.44
SSN3YPL042C PDS5Q04264 1277 aa12.29□□□□□ -0.44
SSN3YPL042C CWC22P53333 577 aaKnown RBP12.29□□□□□ -0.44
SSN3YPL042C RCM1P53972 490 aa12.28□□□□□ -0.44
SSN3YPL042C SPT7P35177 1332 aa12.27□□□□□ -0.45
SSN3YPL042C THI12P42883 340 aa12.26□□□□□ -0.45
SSN3YPL042C THI5P43534 340 aa12.26□□□□□ -0.45
SSN3YPL042C THI11P47183 340 aa12.26□□□□□ -0.45
SSN3YPL042C THI13Q07748 340 aa12.26□□□□□ -0.45
SSN3YPL042C PSK1P31374 1356 aa12.25□□□□□ -0.45
SSN3YPL042C PPH3P32345 308 aa12.24□□□□□ -0.45
SSN3YPL042C MLP1Q02455 1875 aaKnown RBP12.24□□□□□ -0.45
SSN3YPL042C CPS1P27614 576 aa12.23□□□□□ -0.45
SSN3YPL042C FKH1P40466 484 aa12.22□□□□□ -0.45
SSN3YPL042C YML133CQ03099 1374 aa12.21□□□□□ -0.45
SSN3YPL042C YLL067CQ07888 1374 aa12.21□□□□□ -0.45
SSN3YPL042C YLL066CQ99208 1374 aa12.21□□□□□ -0.45
SSN3YPL042C PSD2P53037 1138 aaKnown RBP12.21□□□□□ -0.45
SSN3YPL042C RTG3P38165 486 aa12.19□□□□□ -0.46
SSN3YPL042C RLF2Q12495 606 aa12.19□□□□□ -0.46
SSN3YPL042C BRL1P38770 471 aa12.18□□□□□ -0.46
SSN3YPL042C YFR006WP43590 535 aa12.16□□□□□ -0.46
SSN3YPL042C ENP1P38333 483 aaKnown RBP12.14□□□□□ -0.47
SSN3YPL042C NST1P53935 1240 aa12.13□□□□□ -0.47
SSN3YPL042C LEU2P04173 364 aaPredicted RBP12.12□□□□□ -0.47
SSN3YPL042C ADE6P38972 1358 aaKnown RBP12.11□□□□□ -0.47
SSN3YPL042C MTR4P47047 1073 aaKnown RBP12.1□□□□□ -0.47
SSN3YPL042C SWE1P32944 819 aa12.09□□□□□ -0.47
SSN3YPL042C GIN4Q12263 1142 aa12.09□□□□□ -0.47
SSN3YPL042C NSR1P27476 414 aaKnown RBP RIP-Chip data12.08□□□□□ -0.48not detected
SSN3YPL042C NOP2P40991 618 aaKnown RBP12.07□□□□□ -0.48
SSN3YPL042C TY4B-HP0C2J7 1802 aa12.06□□□□□ -0.48
SSN3YPL042C TY4B-JP47024 1803 aa12.06□□□□□ -0.48
SSN3YPL042C PRP43P53131 767 aaKnown RBP12.05□□□□□ -0.48
SSN3YPL042C YEF3P16521 1044 aaKnown RBP12.04□□□□□ -0.48
SSN3YPL042C PDI1P17967 522 aaKnown RBP12.03□□□□□ -0.48
SSN3YPL042C TAP42Q04372 366 aa12.03□□□□□ -0.48
SSN3YPL042C PTP3P40048 928 aa12.02□□□□□ -0.49
SSN3YPL042C RLP24Q07915 199 aaKnown RBP12.02□□□□□ -0.49
SSN3YPL042C NUG1P40010 520 aaKnown RBP12.01□□□□□ -0.49
SSN3YPL042C RPS24AP0CX31 135 aaKnown RBP12□□□□□ -0.49
SSN3YPL042C RPS24BP0CX32 135 aaKnown RBP12□□□□□ -0.49
SSN3YPL042C TRK1P12685 1235 aa12□□□□□ -0.49
SSN3YPL042C CSE4P36012 229 aa12□□□□□ -0.49
SSN3YPL042C RTF1P53064 558 aa11.99□□□□□ -0.49
SSN3YPL042C AUS1Q08409 1394 aa11.99□□□□□ -0.49
SSN3YPL042C GRX4P32642 244 aa11.97□□□□□ -0.49
SSN3YPL042C DEF1P35732 738 aaKnown RBP11.97□□□□□ -0.49
SSN3YPL042C PSH1Q12161 406 aa11.97□□□□□ -0.49
SSN3YPL042C KAR2P16474 682 aaKnown RBP11.96□□□□□ -0.5
SSN3YPL042C SUB1P54000 292 aaKnown RBP11.95□□□□□ -0.5
SSN3YPL042C HIM1Q06674 414 aa11.95□□□□□ -0.5
SSN3YPL042C HIF1Q12373 385 aa11.95□□□□□ -0.5
SSN3YPL042C RRP5Q05022 1729 aaKnown RBP11.95□□□□□ -0.5
SSN3YPL042C VPS72Q03388 795 aa11.94□□□□□ -0.5
SSN3YPL042C PRP45P28004 379 aaPredicted RBP11.92□□□□□ -0.5
SSN3YPL042C PRP5P21372 849 aaPredicted RBP11.91□□□□□ -0.5
SSN3YPL042C ATG36P46983 293 aa11.91□□□□□ -0.5
SSN3YPL042C GAS4Q08271 471 aa11.91□□□□□ -0.5
SSN3YPL042C YIL177CP40434 1758 aa11.91□□□□□ -0.5
SSN3YPL042C YJL225CP40889 1758 aa11.91□□□□□ -0.5
SSN3YPL042C YRF1-2P40105 1681 aa11.91□□□□□ -0.5
SSN3YPL042C DPS1P04802 557 aaKnown RBP11.91□□□□□ -0.5
SSN3YPL042C SNF2P22082 1703 aa11.91□□□□□ -0.5
SSN3YPL042C TOA1P32773 286 aa11.91□□□□□ -0.5
SSN3YPL042C PRS1P32895 427 aaKnown RBP11.89□□□□□ -0.51
SSN3YPL042C RPN1P38764 993 aaKnown RBP11.88□□□□□ -0.51
SSN3YPL042C RRP46P53256 223 aaPredicted RBP11.87□□□□□ -0.51
SSN3YPL042C RPO41P13433 1351 aaKnown RBP11.87□□□□□ -0.51
SSN3YPL042C MSB3P48566 633 aaPredicted RBP11.87□□□□□ -0.51
SSN3YPL042C TPO2P53283 614 aa11.85□□□□□ -0.51
SSN3YPL042C PAP2P53632 584 aaKnown RBP11.85□□□□□ -0.51
SSN3YPL042C YML020WQ03722 664 aa11.85□□□□□ -0.51
SSN3YPL042C SLM3Q12093 417 aa11.85□□□□□ -0.51
SSN3YPL042C RPP0P05317 312 aaKnown RBP11.84□□□□□ -0.51
SSN3YPL042C ASF1P32447 279 aa11.84□□□□□ -0.51
SSN3YPL042C REB1P21538 810 aa11.84□□□□□ -0.51
SSN3YPL042C YDL144CQ07589 356 aa11.83□□□□□ -0.52
SSN3YPL042C FKS3Q04952 1785 aa11.83□□□□□ -0.52
SSN3YPL042C YAH1Q12184 172 aaKnown RBP11.82□□□□□ -0.52
SSN3YPL042C URB1P34241 1764 aaKnown RBP11.82□□□□□ -0.52
SSN3YPL042C RTR1P40084 226 aaPredicted RBP11.81□□□□□ -0.52
SSN3YPL042C ENT1Q12518 454 aa11.81□□□□□ -0.52
SSN3YPL042C APC1P53886 1748 aa11.81□□□□□ -0.52
SSN3YPL042C LAM6Q08001 693 aa11.8□□□□□ -0.52
SSN3YPL042C TCB1Q12466 1186 aa11.8□□□□□ -0.52
SSN3YPL042C VPS27P40343 622 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms