RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeastyeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM2YLR058C SCT1P32784 759 aa14.06□□□□□ -0.16
SHM2YLR058C PSK1P31374 1356 aa14.03□□□□□ -0.16
SHM2YLR058C PDS5Q04264 1277 aa13.97□□□□□ -0.17
SHM2YLR058C YML133CQ03099 1374 aa13.95□□□□□ -0.18
SHM2YLR058C YLL067CQ07888 1374 aa13.95□□□□□ -0.18
SHM2YLR058C YLL066CQ99208 1374 aa13.95□□□□□ -0.18
SHM2YLR058C PTP3P40048 928 aa13.94□□□□□ -0.18
SHM2YLR058C FKH1P40466 484 aa13.94□□□□□ -0.18
SHM2YLR058C MLP1Q02455 1875 aaKnown RBP13.91□□□□□ -0.18
SHM2YLR058C RTG3P38165 486 aa13.91□□□□□ -0.18
SHM2YLR058C ADE6P38972 1358 aaKnown RBP13.9□□□□□ -0.18
SHM2YLR058C LEU2P04173 364 aaPredicted RBP13.9□□□□□ -0.19
SHM2YLR058C MTR4P47047 1073 aaKnown RBP13.87□□□□□ -0.19
SHM2YLR058C SEC3P33332 1336 aaKnown RBP13.85□□□□□ -0.19
SHM2YLR058C TY4B-HP0C2J7 1802 aa13.85□□□□□ -0.19
SHM2YLR058C TY4B-JP47024 1803 aa13.85□□□□□ -0.19
SHM2YLR058C PSD2P53037 1138 aaKnown RBP13.83□□□□□ -0.2
SHM2YLR058C PRP43P53131 767 aaKnown RBP13.83□□□□□ -0.2
SHM2YLR058C SPT7P35177 1332 aa13.82□□□□□ -0.2
SHM2YLR058C NST1P53935 1240 aa13.81□□□□□ -0.2
SHM2YLR058C CSE4P36012 229 aa13.8□□□□□ -0.2
SHM2YLR058C RPS24AP0CX31 135 aaKnown RBP13.79□□□□□ -0.2
SHM2YLR058C RPS24BP0CX32 135 aaKnown RBP13.79□□□□□ -0.2
SHM2YLR058C RRP5Q05022 1729 aaKnown RBP13.78□□□□□ -0.2
SHM2YLR058C PRP45P28004 379 aaPredicted RBP13.78□□□□□ -0.2
SHM2YLR058C YAH1Q12184 172 aaKnown RBP13.78□□□□□ -0.2
SHM2YLR058C PRP5P21372 849 aaPredicted RBP13.76□□□□□ -0.21
SHM2YLR058C APP1P53933 587 aa13.76□□□□□ -0.21
SHM2YLR058C PDI1P17967 522 aaKnown RBP13.75□□□□□ -0.21
SHM2YLR058C REB1P21538 810 aa13.74□□□□□ -0.21
SHM2YLR058C LEU3P08638 886 aa13.73□□□□□ -0.21
SHM2YLR058C YEF3P16521 1044 aaKnown RBP13.72□□□□□ -0.21
SHM2YLR058C RTF1P53064 558 aa13.72□□□□□ -0.21
SHM2YLR058C TAP42Q04372 366 aa13.72□□□□□ -0.21
SHM2YLR058C ENT1Q12518 454 aa13.72□□□□□ -0.21
SHM2YLR058C MSB3P48566 633 aaPredicted RBP13.69□□□□□ -0.22
SHM2YLR058C AUS1Q08409 1394 aa13.69□□□□□ -0.22
SHM2YLR058C YRF1-2P40105 1681 aa13.68□□□□□ -0.22
SHM2YLR058C HIM1Q06674 414 aa13.68□□□□□ -0.22
SHM2YLR058C GAS4Q08271 471 aa13.68□□□□□ -0.22
SHM2YLR058C TRK1P12685 1235 aa13.67□□□□□ -0.22
SHM2YLR058C GRX4P32642 244 aa13.66□□□□□ -0.22
SHM2YLR058C ENV9Q08651 330 aa13.66□□□□□ -0.22
SHM2YLR058C DPS1P04802 557 aaKnown RBP13.65□□□□□ -0.22
SHM2YLR058C SLM3Q12093 417 aa13.65□□□□□ -0.22
SHM2YLR058C YIL177CP40434 1758 aa13.65□□□□□ -0.22
SHM2YLR058C YJL225CP40889 1758 aa13.65□□□□□ -0.22
SHM2YLR058C KAR2P16474 682 aaKnown RBP13.63□□□□□ -0.23
SHM2YLR058C TCB1Q12466 1186 aa13.61□□□□□ -0.23
SHM2YLR058C ENP1P38333 483 aaKnown RBP13.57□□□□□ -0.24
SHM2YLR058C IMH1Q06704 911 aaKnown RBP13.56□□□□□ -0.24
SHM2YLR058C URB1P34241 1764 aaKnown RBP13.56□□□□□ -0.24
SHM2YLR058C RSF2P46974 1380 aa13.56□□□□□ -0.24
SHM2YLR058C YIL055CP40523 627 aaKnown RBP13.56□□□□□ -0.24
SHM2YLR058C FKS3Q04952 1785 aa13.55□□□□□ -0.24
SHM2YLR058C RPO41P13433 1351 aaKnown RBP13.55□□□□□ -0.24
SHM2YLR058C XKS1P42826 600 aa13.54□□□□□ -0.24
SHM2YLR058C PAP2P53632 584 aaKnown RBP13.54□□□□□ -0.24
SHM2YLR058C RRP46P53256 223 aaPredicted RBP13.53□□□□□ -0.24
SHM2YLR058C APC1P53886 1748 aa13.52□□□□□ -0.24
SHM2YLR058C IES2P40154 320 aa13.52□□□□□ -0.25
SHM2YLR058C IOC4Q04213 475 aa13.52□□□□□ -0.25
SHM2YLR058C BUB1P41695 1021 aaKnown RBP RIP-Chip data13.5□□□□□ -0.25not detected
SHM2YLR058C SNF2P22082 1703 aa13.47□□□□□ -0.25
SHM2YLR058C YRF1-3P0CX14 1859 aa13.47□□□□□ -0.25
SHM2YLR058C YRF1-7P0CX15 1859 aa13.47□□□□□ -0.25
SHM2YLR058C YRF1-6P53819 1859 aa13.47□□□□□ -0.25
SHM2YLR058C NSR1P27476 414 aaKnown RBP RIP-Chip data13.46□□□□□ -0.26not detected
SHM2YLR058C RCR1P38212 213 aa13.46□□□□□ -0.26
SHM2YLR058C RTR1P40084 226 aaPredicted RBP13.45□□□□□ -0.26
SHM2YLR058C SIR4P11978 1358 aa13.44□□□□□ -0.26
SHM2YLR058C AKL1P38080 1108 aaKnown RBP13.44□□□□□ -0.26
SHM2YLR058C DSD1P53095 428 aa13.43□□□□□ -0.26
SHM2YLR058C YRF1-4O13559 1382 aa13.42□□□□□ -0.26
SHM2YLR058C ROM2P51862 1356 aaKnown RBP13.41□□□□□ -0.26
SHM2YLR058C GLN1P32288 370 aaKnown RBP13.4□□□□□ -0.26
SHM2YLR058C YKL133CP36066 463 aa13.4□□□□□ -0.26
SHM2YLR058C YDL144CQ07589 356 aa13.4□□□□□ -0.26
SHM2YLR058C DOT5P40553 215 aa13.39□□□□□ -0.27
SHM2YLR058C MPP10P47083 593 aaKnown RBP13.39□□□□□ -0.27
SHM2YLR058C PRD1P25375 712 aa13.39□□□□□ -0.27
SHM2YLR058C HSP104P31539 908 aaKnown RBP13.39□□□□□ -0.27
SHM2YLR058C ADE16P54113 591 aaKnown RBP13.36□□□□□ -0.27
SHM2YLR058C FOX2Q02207 900 aaKnown RBP13.36□□□□□ -0.27
SHM2YLR058C MEC3Q02574 474 aa13.36□□□□□ -0.27
SHM2YLR058C YMR074CQ04773 145 aa13.36□□□□□ -0.27
SHM2YLR058C RPP0P05317 312 aaKnown RBP13.35□□□□□ -0.27
SHM2YLR058C CTF4Q01454 927 aa13.35□□□□□ -0.27
SHM2YLR058C INP54Q08227 384 aaKnown RBP13.35□□□□□ -0.27
SHM2YLR058C PRS1P32895 427 aaKnown RBP13.34□□□□□ -0.27
SHM2YLR058C THI22Q06490 572 aa13.34□□□□□ -0.27
SHM2YLR058C NTH2P35172 780 aa13.33□□□□□ -0.28
SHM2YLR058C FRK1Q03002 865 aaPredicted RBP13.33□□□□□ -0.28
SHM2YLR058C COBP00163 385 aa13.31□□□□□ -0.28
SHM2YLR058C VPS27P40343 622 aaKnown RBP13.31□□□□□ -0.28
SHM2YLR058C AOS1Q06624 347 aa13.3□□□□□ -0.28
SHM2YLR058C NUP145P49687 1317 aa13.29□□□□□ -0.28
SHM2YLR058C RPN11P43588 306 aaKnown RBP13.29□□□□□ -0.28
SHM2YLR058C YNL050CP53952 270 aa13.29□□□□□ -0.28
SHM2YLR058C SUI2P20459 304 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms