RNA–Protein interactions for RNA: YFR034C

PHO4, Transcript of Basic helix-loop-helix (bHLH) transcription factor of the myc-family, yeastyeast

Gene PHO4, Length 939 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PHO4YFR034C FKH1P40466 484 aa16.94■□□□□ 0.3
PHO4YFR034C YML133CQ03099 1374 aa16.92■□□□□ 0.3
PHO4YFR034C YLL067CQ07888 1374 aa16.92■□□□□ 0.3
PHO4YFR034C YLL066CQ99208 1374 aa16.92■□□□□ 0.3
PHO4YFR034C PSK1P31374 1356 aa16.91■□□□□ 0.3
PHO4YFR034C RCM1P53972 490 aa16.9■□□□□ 0.3
PHO4YFR034C YNR029CP53729 429 aaKnown RBP16.88■□□□□ 0.29
PHO4YFR034C PPH3P32345 308 aa16.84■□□□□ 0.29
PHO4YFR034C PRS1P32895 427 aaKnown RBP16.82■□□□□ 0.28
PHO4YFR034C CPS1P27614 576 aa16.79■□□□□ 0.28
PHO4YFR034C YMR196WQ04336 1088 aa16.75■□□□□ 0.27
PHO4YFR034C SNF2P22082 1703 aa16.75■□□□□ 0.27
PHO4YFR034C YEF3P16521 1044 aaKnown RBP16.74■□□□□ 0.27
PHO4YFR034C TRK1P12685 1235 aa16.71■□□□□ 0.27
PHO4YFR034C LEU2P04173 364 aaPredicted RBP16.7■□□□□ 0.26
PHO4YFR034C MTR4P47047 1073 aaKnown RBP16.68■□□□□ 0.26
PHO4YFR034C IOC4Q04213 475 aa16.68■□□□□ 0.26
PHO4YFR034C TY4B-HP0C2J7 1802 aa16.68■□□□□ 0.26
PHO4YFR034C TY4B-JP47024 1803 aa16.68■□□□□ 0.26
PHO4YFR034C ADE6P38972 1358 aaKnown RBP16.66■□□□□ 0.26
PHO4YFR034C PDI1P17967 522 aaKnown RBP16.65■□□□□ 0.26
PHO4YFR034C THI12P42883 340 aa16.65■□□□□ 0.26
PHO4YFR034C THI5P43534 340 aa16.65■□□□□ 0.26
PHO4YFR034C THI11P47183 340 aa16.65■□□□□ 0.26
PHO4YFR034C THI13Q07748 340 aa16.65■□□□□ 0.26
PHO4YFR034C TAP42Q04372 366 aa16.64■□□□□ 0.25
PHO4YFR034C MIF2P35201 549 aa16.63■□□□□ 0.25
PHO4YFR034C NOP2P40991 618 aaKnown RBP16.63■□□□□ 0.25
PHO4YFR034C RPP0P05317 312 aaKnown RBP16.61■□□□□ 0.25
PHO4YFR034C KAR2P16474 682 aaKnown RBP16.61■□□□□ 0.25
PHO4YFR034C AUS1Q08409 1394 aa16.6■□□□□ 0.25
PHO4YFR034C RTF1P53064 558 aa16.59■□□□□ 0.25
PHO4YFR034C GRX4P32642 244 aa16.56■□□□□ 0.24
PHO4YFR034C PRP43P53131 767 aaKnown RBP16.56■□□□□ 0.24
PHO4YFR034C YDL144CQ07589 356 aa16.56■□□□□ 0.24
PHO4YFR034C CSE4P36012 229 aa16.55■□□□□ 0.24
PHO4YFR034C VPS27P40343 622 aaKnown RBP16.55■□□□□ 0.24
PHO4YFR034C RPS24AP0CX31 135 aaKnown RBP16.54■□□□□ 0.24
PHO4YFR034C RPS24BP0CX32 135 aaKnown RBP16.54■□□□□ 0.24
PHO4YFR034C HIM1Q06674 414 aa16.54■□□□□ 0.24
PHO4YFR034C CDC45Q08032 650 aa16.54■□□□□ 0.24
PHO4YFR034C RRP46P53256 223 aaPredicted RBP16.51■□□□□ 0.23
PHO4YFR034C YIL177CP40434 1758 aa16.51■□□□□ 0.23
PHO4YFR034C YJL225CP40889 1758 aa16.51■□□□□ 0.23
PHO4YFR034C YRF1-2P40105 1681 aa16.5■□□□□ 0.23
PHO4YFR034C RTR1P40084 226 aaPredicted RBP16.48■□□□□ 0.23
PHO4YFR034C MPP10P47083 593 aaKnown RBP16.47■□□□□ 0.23
PHO4YFR034C PAP2P53632 584 aaKnown RBP16.47■□□□□ 0.23
PHO4YFR034C RRP5Q05022 1729 aaKnown RBP16.46■□□□□ 0.23
PHO4YFR034C GAS4Q08271 471 aa16.46■□□□□ 0.23
PHO4YFR034C RPO41P13433 1351 aaKnown RBP16.46■□□□□ 0.23
PHO4YFR034C DPS1P04802 557 aaKnown RBP16.44■□□□□ 0.22
PHO4YFR034C RVB2Q12464 471 aaKnown RBP16.44■□□□□ 0.22
PHO4YFR034C APC1P53886 1748 aa16.44■□□□□ 0.22
PHO4YFR034C FKS3Q04952 1785 aa16.42■□□□□ 0.22
PHO4YFR034C SUI2P20459 304 aaKnown RBP16.41■□□□□ 0.22
PHO4YFR034C URB1P34241 1764 aaKnown RBP16.39■□□□□ 0.21
PHO4YFR034C PRD1P25375 712 aa16.38■□□□□ 0.21
PHO4YFR034C YRB30P53107 440 aaPredicted RBP16.37■□□□□ 0.21
PHO4YFR034C FUN12P39730 1002 aaKnown RBP16.34■□□□□ 0.21
PHO4YFR034C THI22Q06490 572 aa16.34■□□□□ 0.21
PHO4YFR034C PTP3P40048 928 aa16.33■□□□□ 0.2
PHO4YFR034C SAP155P43612 1002 aa16.33■□□□□ 0.2
PHO4YFR034C PRP5P21372 849 aaPredicted RBP16.31■□□□□ 0.2
PHO4YFR034C BUB1P41695 1021 aaKnown RBP RIP-Chip data16.31■□□□□ 0.2not detected
PHO4YFR034C PRP45P28004 379 aaPredicted RBP16.3■□□□□ 0.2
PHO4YFR034C YRF1-4O13559 1382 aa16.29■□□□□ 0.2
PHO4YFR034C TPD3P31383 635 aa16.29■□□□□ 0.2
PHO4YFR034C AKL1P38080 1108 aaKnown RBP16.28■□□□□ 0.2
PHO4YFR034C HEF3P53978 1044 aaKnown RBP16.28■□□□□ 0.2
PHO4YFR034C NAB6Q03735 1134 aaKnown RBP RIP-Chip data16.26■□□□□ 0.19not detected
PHO4YFR034C MSB3P48566 633 aaPredicted RBP16.25■□□□□ 0.19
PHO4YFR034C SLM3Q12093 417 aa16.25■□□□□ 0.19
PHO4YFR034C SIR4P11978 1358 aa16.25■□□□□ 0.19
PHO4YFR034C RTT109Q07794 436 aa16.24■□□□□ 0.19
PHO4YFR034C DSD1P53095 428 aa16.22■□□□□ 0.19
PHO4YFR034C YFR006WP43590 535 aa16.17■□□□□ 0.18
PHO4YFR034C YNL050CP53952 270 aa16.16■□□□□ 0.18
PHO4YFR034C TCB1Q12466 1186 aa16.16■□□□□ 0.18
PHO4YFR034C FPR3P38911 411 aaKnown RBP16.15■□□□□ 0.18
PHO4YFR034C RSF2P46974 1380 aa16.14■□□□□ 0.17
PHO4YFR034C RAD2P07276 1031 aa16.14■□□□□ 0.17
PHO4YFR034C NTH2P35172 780 aa16.14■□□□□ 0.17
PHO4YFR034C XKS1P42826 600 aa16.14■□□□□ 0.17
PHO4YFR034C HSP104P31539 908 aaKnown RBP16.13■□□□□ 0.17
PHO4YFR034C YIL092WP40497 633 aa16.12■□□□□ 0.17
PHO4YFR034C REB1P21538 810 aa16.11■□□□□ 0.17
PHO4YFR034C BUD27P43573 796 aaKnown RBP RIP-Chip data16.11■□□□□ 0.17not detected
PHO4YFR034C CTF4Q01454 927 aa16.11■□□□□ 0.17
PHO4YFR034C MAK21Q12176 1025 aaKnown RBP16.11■□□□□ 0.17
PHO4YFR034C DAL5P15365 543 aa16.1■□□□□ 0.17
PHO4YFR034C TFA1P36100 482 aa16.1■□□□□ 0.17
PHO4YFR034C AOS1Q06624 347 aa16.1■□□□□ 0.17
PHO4YFR034C GYP7P48365 746 aa16.09■□□□□ 0.17
PHO4YFR034C ZDS1P50111 915 aaKnown RBP16.09■□□□□ 0.17
PHO4YFR034C MAM1P40065 302 aa16.08■□□□□ 0.16
PHO4YFR034C YRF1-3P0CX14 1859 aa16.08■□□□□ 0.16
PHO4YFR034C YRF1-7P0CX15 1859 aa16.08■□□□□ 0.16
PHO4YFR034C YRF1-6P53819 1859 aa16.08■□□□□ 0.16
PHO4YFR034C RCR1P38212 213 aa16.07■□□□□ 0.16
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms