RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	CPS1	P27614	576 aa		14.43	□□□□□ -0.1
VPS60	YDR486C	PSK1	P31374	1356 aa		14.42	□□□□□ -0.1
VPS60	YDR486C	PDS5	Q04264	1277 aa		14.38	□□□□□ -0.11
VPS60	YDR486C	YML133C	Q03099	1374 aa		14.35	□□□□□ -0.11
VPS60	YDR486C	YLL067C	Q07888	1374 aa		14.35	□□□□□ -0.11
VPS60	YDR486C	YLL066C	Q99208	1374 aa		14.35	□□□□□ -0.11
VPS60	YDR486C	FKH1	P40466	484 aa		14.34	□□□□□ -0.11
VPS60	YDR486C	RTG3	P38165	486 aa		14.32	□□□□□ -0.12
VPS60	YDR486C	PTP3	P40048	928 aa		14.29	□□□□□ -0.12
VPS60	YDR486C	SEC3	P33332	1336 aa	Known RBP	14.29	□□□□□ -0.12
VPS60	YDR486C	MLP1	Q02455	1875 aa	Known RBP	14.29	□□□□□ -0.12
VPS60	YDR486C	ADE6	P38972	1358 aa	Known RBP	14.28	□□□□□ -0.12
VPS60	YDR486C	LEU2	P04173	364 aa	Predicted RBP	14.27	□□□□□ -0.13
VPS60	YDR486C	SPT7	P35177	1332 aa		14.26	□□□□□ -0.13
VPS60	YDR486C	PSD2	P53037	1138 aa	Known RBP	14.25	□□□□□ -0.13
VPS60	YDR486C	MTR4	P47047	1073 aa	Known RBP	14.24	□□□□□ -0.13
VPS60	YDR486C	NST1	P53935	1240 aa		14.22	□□□□□ -0.13
VPS60	YDR486C	TY4B-H	P0C2J7	1802 aa		14.21	□□□□□ -0.13
VPS60	YDR486C	TY4B-J	P47024	1803 aa		14.21	□□□□□ -0.13
VPS60	YDR486C	PRP43	P53131	767 aa	Known RBP	14.2	□□□□□ -0.14
VPS60	YDR486C	RPS24A	P0CX31	135 aa	Known RBP	14.17	□□□□□ -0.14
VPS60	YDR486C	RPS24B	P0CX32	135 aa	Known RBP	14.17	□□□□□ -0.14
VPS60	YDR486C	CSE4	P36012	229 aa		14.17	□□□□□ -0.14
VPS60	YDR486C	LEU3	P08638	886 aa		14.16	□□□□□ -0.14
VPS60	YDR486C	PRP45	P28004	379 aa	Predicted RBP	14.14	□□□□□ -0.15
VPS60	YDR486C	RRP5	Q05022	1729 aa	Known RBP	14.14	□□□□□ -0.15
VPS60	YDR486C	PDI1	P17967	522 aa	Known RBP	14.13	□□□□□ -0.15
VPS60	YDR486C	YEF3	P16521	1044 aa	Known RBP	14.12	□□□□□ -0.15
VPS60	YDR486C	PRP5	P21372	849 aa	Predicted RBP	14.11	□□□□□ -0.15
VPS60	YDR486C	TAP42	Q04372	366 aa		14.11	□□□□□ -0.15
VPS60	YDR486C	REB1	P21538	810 aa		14.1	□□□□□ -0.15
VPS60	YDR486C	YAH1	Q12184	172 aa	Known RBP	14.1	□□□□□ -0.15
VPS60	YDR486C	AUS1	Q08409	1394 aa		14.09	□□□□□ -0.15
VPS60	YDR486C	RTF1	P53064	558 aa		14.09	□□□□□ -0.15
VPS60	YDR486C	APP1	P53933	587 aa		14.09	□□□□□ -0.15
VPS60	YDR486C	TRK1	P12685	1235 aa		14.07	□□□□□ -0.16
VPS60	YDR486C	HIM1	Q06674	414 aa		14.06	□□□□□ -0.16
VPS60	YDR486C	ENT1	Q12518	454 aa		14.06	□□□□□ -0.16
VPS60	YDR486C	GRX4	P32642	244 aa		14.05	□□□□□ -0.16
VPS60	YDR486C	MSB3	P48566	633 aa	Predicted RBP	14.05	□□□□□ -0.16
VPS60	YDR486C	GAS4	Q08271	471 aa		14.05	□□□□□ -0.16
VPS60	YDR486C	YRF1-2	P40105	1681 aa		14.04	□□□□□ -0.16
VPS60	YDR486C	DPS1	P04802	557 aa	Known RBP	14.04	□□□□□ -0.16
VPS60	YDR486C	YIL177C	P40434	1758 aa		14.02	□□□□□ -0.16
VPS60	YDR486C	YJL225C	P40889	1758 aa		14.02	□□□□□ -0.16
VPS60	YDR486C	KAR2	P16474	682 aa	Known RBP	14.02	□□□□□ -0.17
VPS60	YDR486C	ENP1	P38333	483 aa	Known RBP	14.02	□□□□□ -0.17
VPS60	YDR486C	ENV9	Q08651	330 aa		14	□□□□□ -0.17
VPS60	YDR486C	SLM3	Q12093	417 aa		14	□□□□□ -0.17
VPS60	YDR486C	TCB1	Q12466	1186 aa		13.95	□□□□□ -0.18
VPS60	YDR486C	RPO41	P13433	1351 aa	Known RBP	13.94	□□□□□ -0.18
VPS60	YDR486C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	13.93	□□□□□ -0.18	not detected
VPS60	YDR486C	PAP2	P53632	584 aa	Known RBP	13.93	□□□□□ -0.18
VPS60	YDR486C	URB1	P34241	1764 aa	Known RBP	13.92	□□□□□ -0.18
VPS60	YDR486C	RRP46	P53256	223 aa	Predicted RBP	13.92	□□□□□ -0.18
VPS60	YDR486C	IOC4	Q04213	475 aa		13.92	□□□□□ -0.18
VPS60	YDR486C	RSF2	P46974	1380 aa		13.92	□□□□□ -0.18
VPS60	YDR486C	FKS3	Q04952	1785 aa		13.91	□□□□□ -0.18
VPS60	YDR486C	XKS1	P42826	600 aa		13.9	□□□□□ -0.18
VPS60	YDR486C	IMH1	Q06704	911 aa	Known RBP	13.89	□□□□□ -0.19
VPS60	YDR486C	APC1	P53886	1748 aa		13.89	□□□□□ -0.19
VPS60	YDR486C	SNF2	P22082	1703 aa		13.88	□□□□□ -0.19
VPS60	YDR486C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	13.88	□□□□□ -0.19	not detected
VPS60	YDR486C	IES2	P40154	320 aa		13.87	□□□□□ -0.19
VPS60	YDR486C	YIL055C	P40523	627 aa	Known RBP	13.87	□□□□□ -0.19
VPS60	YDR486C	RTR1	P40084	226 aa	Predicted RBP	13.84	□□□□□ -0.19
VPS60	YDR486C	AKL1	P38080	1108 aa	Known RBP	13.81	□□□□□ -0.2
VPS60	YDR486C	RCR1	P38212	213 aa		13.81	□□□□□ -0.2
VPS60	YDR486C	DSD1	P53095	428 aa		13.81	□□□□□ -0.2
VPS60	YDR486C	YDL144C	Q07589	356 aa		13.81	□□□□□ -0.2
VPS60	YDR486C	YRF1-4	O13559	1382 aa		13.81	□□□□□ -0.2
VPS60	YDR486C	SIR4	P11978	1358 aa		13.81	□□□□□ -0.2
VPS60	YDR486C	YRF1-3	P0CX14	1859 aa		13.8	□□□□□ -0.2
VPS60	YDR486C	YRF1-7	P0CX15	1859 aa		13.8	□□□□□ -0.2
VPS60	YDR486C	YRF1-6	P53819	1859 aa		13.8	□□□□□ -0.2
VPS60	YDR486C	MPP10	P47083	593 aa	Known RBP	13.79	□□□□□ -0.2
VPS60	YDR486C	PRD1	P25375	712 aa		13.78	□□□□□ -0.2
VPS60	YDR486C	PRS1	P32895	427 aa	Known RBP	13.77	□□□□□ -0.21
VPS60	YDR486C	YKL133C	P36066	463 aa		13.76	□□□□□ -0.21
VPS60	YDR486C	ROM2	P51862	1356 aa	Known RBP	13.75	□□□□□ -0.21
VPS60	YDR486C	RPP0	P05317	312 aa	Known RBP	13.75	□□□□□ -0.21
VPS60	YDR486C	HSP104	P31539	908 aa	Known RBP	13.74	□□□□□ -0.21
VPS60	YDR486C	THI22	Q06490	572 aa		13.74	□□□□□ -0.21
VPS60	YDR486C	DOT5	P40553	215 aa		13.73	□□□□□ -0.21
VPS60	YDR486C	ADE16	P54113	591 aa	Known RBP	13.72	□□□□□ -0.21
VPS60	YDR486C	GLN1	P32288	370 aa	Known RBP	13.71	□□□□□ -0.21
VPS60	YDR486C	NTH2	P35172	780 aa		13.71	□□□□□ -0.21
VPS60	YDR486C	VPS27	P40343	622 aa	Known RBP	13.71	□□□□□ -0.21
VPS60	YDR486C	CTF4	Q01454	927 aa		13.71	□□□□□ -0.21
VPS60	YDR486C	MEC3	Q02574	474 aa		13.71	□□□□□ -0.21
VPS60	YDR486C	INP54	Q08227	384 aa	Known RBP	13.71	□□□□□ -0.21
VPS60	YDR486C	FOX2	Q02207	900 aa	Known RBP	13.7	□□□□□ -0.22
VPS60	YDR486C	FRK1	Q03002	865 aa	Predicted RBP	13.69	□□□□□ -0.22
VPS60	YDR486C	SUI2	P20459	304 aa	Known RBP	13.68	□□□□□ -0.22
VPS60	YDR486C	AOS1	Q06624	347 aa		13.68	□□□□□ -0.22
VPS60	YDR486C	CDC45	Q08032	650 aa		13.68	□□□□□ -0.22
VPS60	YDR486C	SAP155	P43612	1002 aa		13.67	□□□□□ -0.22
VPS60	YDR486C	YMR074C	Q04773	145 aa		13.67	□□□□□ -0.22
VPS60	YDR486C	YNL050C	P53952	270 aa		13.66	□□□□□ -0.22
VPS60	YDR486C	HEF3	P53978	1044 aa	Known RBP	13.66	□□□□□ -0.22

Retrieved 100 of 5,963 RNA–protein pairs in 84.5 ms