RNA–Protein interactions for RNA: YBL022C

PIM1, Transcript of ATP-dependent Lon protease, yeast

Gene PIM1, Length 3,402 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PIM1	YBL022C	PDR11	P40550	1411 aa		5.1	□□□□□ -1.59
PIM1	YBL022C	TY1B-NL2	Q99337	1749 aa	Known RBP	5.1	□□□□□ -1.59
PIM1	YBL022C	BUD3	P25558	1636 aa		5.1	□□□□□ -1.59
PIM1	YBL022C	QCR6	P00127	147 aa		5.09	□□□□□ -1.59
PIM1	YBL022C	BYE1	P36106	594 aa		5.09	□□□□□ -1.59
PIM1	YBL022C	LSP1	Q12230	341 aa	Known RBP	5.09	□□□□□ -1.59
PIM1	YBL022C	YRF1-1	P0CX20	1796 aa		5.09	□□□□□ -1.59
PIM1	YBL022C	YRF1-5	P0CX21	1796 aa		5.09	□□□□□ -1.59
PIM1	YBL022C	YRF1-8	P0CX22	1796 aa		5.09	□□□□□ -1.59
PIM1	YBL022C	SIC1	P38634	284 aa		5.09	□□□□□ -1.6
PIM1	YBL022C	EAF7	P53911	425 aa	Known RBP	5.09	□□□□□ -1.6
PIM1	YBL022C	VPS4	P52917	437 aa		5.08	□□□□□ -1.6
PIM1	YBL022C	ROM2	P51862	1356 aa	Known RBP	5.08	□□□□□ -1.6
PIM1	YBL022C	NAP1	P25293	417 aa	Known RBP	5.07	□□□□□ -1.6
PIM1	YBL022C	SPC110	P32380	944 aa		5.07	□□□□□ -1.6
PIM1	YBL022C	KRE33	P53914	1056 aa	Known RBP	5.07	□□□□□ -1.6
PIM1	YBL022C	YRF1-2	P40105	1681 aa		5.07	□□□□□ -1.6
PIM1	YBL022C	CHZ1	P40019	153 aa	Predicted RBP	5.07	□□□□□ -1.6
PIM1	YBL022C	NUP188	P52593	1655 aa	Known RBP	5.07	□□□□□ -1.6
PIM1	YBL022C	DJP1	P40564	432 aa		5.06	□□□□□ -1.6
PIM1	YBL022C	LEU3	P08638	886 aa		5.06	□□□□□ -1.6
PIM1	YBL022C	YSP2	Q06681	1438 aa		5.06	□□□□□ -1.6
PIM1	YBL022C	RPN1	P38764	993 aa	Known RBP	5.06	□□□□□ -1.6
PIM1	YBL022C	NUP145	P49687	1317 aa		5.05	□□□□□ -1.6
PIM1	YBL022C	TEA1	P47988	759 aa		5.05	□□□□□ -1.6
PIM1	YBL022C	CDC45	Q08032	650 aa		5.05	□□□□□ -1.6
PIM1	YBL022C	MED8	P38304	223 aa		5.04	□□□□□ -1.6
PIM1	YBL022C	BMS1	Q08965	1183 aa	Known RBP	5.04	□□□□□ -1.6
PIM1	YBL022C	DIP2	Q12220	943 aa	Predicted RBP	5.04	□□□□□ -1.6
PIM1	YBL022C	HAP5	Q02516	242 aa		5.04	□□□□□ -1.6
PIM1	YBL022C	SUI2	P20459	304 aa	Known RBP	5.04	□□□□□ -1.6
PIM1	YBL022C	VPS27	P40343	622 aa	Known RBP	5.04	□□□□□ -1.6
PIM1	YBL022C	YRF1-4	O13559	1382 aa		5.04	□□□□□ -1.6
PIM1	YBL022C	YML133C	Q03099	1374 aa		5.04	□□□□□ -1.6
PIM1	YBL022C	YLL067C	Q07888	1374 aa		5.04	□□□□□ -1.6
PIM1	YBL022C	AUS1	Q08409	1394 aa		5.04	□□□□□ -1.6
PIM1	YBL022C	YLL066C	Q99208	1374 aa		5.04	□□□□□ -1.6
PIM1	YBL022C	YFR006W	P43590	535 aa		5.03	□□□□□ -1.6
PIM1	YBL022C	PIL1	P53252	339 aa	Known RBP	5.03	□□□□□ -1.6
PIM1	YBL022C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	5.03	□□□□□ -1.6	not detected
PIM1	YBL022C	RAD26	P40352	1085 aa		5.03	□□□□□ -1.6
PIM1	YBL022C	YOL087C	Q99247	1116 aa		5.02	□□□□□ -1.61
PIM1	YBL022C	CIN4	P39110	191 aa		5.02	□□□□□ -1.61
PIM1	YBL022C	APC1	P53886	1748 aa		5.01	□□□□□ -1.61
PIM1	YBL022C	RAV1	P47104	1357 aa		5.01	□□□□□ -1.61
PIM1	YBL022C	MNN4	P36044	1178 aa		5.01	□□□□□ -1.61
PIM1	YBL022C	ECM1	P39715	212 aa		5.01	□□□□□ -1.61
PIM1	YBL022C	RRT14	P40470	206 aa		5.01	□□□□□ -1.61
PIM1	YBL022C	NOP58	Q12499	511 aa	Known RBP	5.01	□□□□□ -1.61
PIM1	YBL022C	YEF3	P16521	1044 aa	Known RBP	5	□□□□□ -1.61
PIM1	YBL022C	UTP10	P42945	1769 aa	Known RBP	5	□□□□□ -1.61
PIM1	YBL022C	SMC3	P47037	1230 aa		5	□□□□□ -1.61
PIM1	YBL022C	IFH1	P39520	1085 aa		4.99	□□□□□ -1.61
PIM1	YBL022C	KRI1	P42846	591 aa	Known RBP	4.99	□□□□□ -1.61
PIM1	YBL022C	YPP1	P46951	817 aa		4.99	□□□□□ -1.61
PIM1	YBL022C	PDS5	Q04264	1277 aa		4.99	□□□□□ -1.61
PIM1	YBL022C	URB1	P34241	1764 aa	Known RBP	4.99	□□□□□ -1.61
PIM1	YBL022C	VPS24	P36095	224 aa	Known RBP	4.99	□□□□□ -1.61
PIM1	YBL022C	YRB30	P53107	440 aa	Predicted RBP	4.99	□□□□□ -1.61
PIM1	YBL022C	VPS72	Q03388	795 aa		4.98	□□□□□ -1.61
PIM1	YBL022C	PSK1	P31374	1356 aa		4.98	□□□□□ -1.61
PIM1	YBL022C	YNL035C	P53962	389 aa	Known RBP	4.98	□□□□□ -1.61
PIM1	YBL022C	RTC1	Q08281	1341 aa		4.98	□□□□□ -1.61
PIM1	YBL022C	MSH1	P25846	959 aa		4.97	□□□□□ -1.61
PIM1	YBL022C	ARL1	P38116	183 aa	Known RBP	4.97	□□□□□ -1.61
PIM1	YBL022C	RKM3	P38222	552 aa		4.97	□□□□□ -1.61
PIM1	YBL022C	SRP54	P20424	541 aa	Known RBP	4.97	□□□□□ -1.61
PIM1	YBL022C	MPE1	P35728	441 aa	Known RBP	4.96	□□□□□ -1.62
PIM1	YBL022C	CIR1	P42940	261 aa		4.96	□□□□□ -1.62
PIM1	YBL022C	RRP46	P53256	223 aa	Predicted RBP	4.96	□□□□□ -1.62
PIM1	YBL022C	NOP14	Q99207	810 aa	Known RBP	4.95	□□□□□ -1.62
PIM1	YBL022C	YIL177C	P40434	1758 aa		4.94	□□□□□ -1.62
PIM1	YBL022C	YJL225C	P40889	1758 aa		4.94	□□□□□ -1.62
PIM1	YBL022C	TRK1	P12685	1235 aa		4.94	□□□□□ -1.62
PIM1	YBL022C	RAD9	P14737	1309 aa		4.94	□□□□□ -1.62
PIM1	YBL022C	SIR4	P11978	1358 aa		4.94	□□□□□ -1.62
PIM1	YBL022C	DRS2	P39524	1355 aa		4.94	□□□□□ -1.62
PIM1	YBL022C	YIL092W	P40497	633 aa		4.94	□□□□□ -1.62
PIM1	YBL022C	SEC7	P11075	2009 aa	Known RBP	4.93	□□□□□ -1.62
PIM1	YBL022C	MCM2	P29469	868 aa		4.93	□□□□□ -1.62
PIM1	YBL022C	RIX1	P38883	763 aa	Predicted RBP	4.93	□□□□□ -1.62
PIM1	YBL022C	YNL011C	P53980	444 aa		4.93	□□□□□ -1.62
PIM1	YBL022C	FPR4	Q06205	392 aa	Predicted RBP	4.93	□□□□□ -1.62
PIM1	YBL022C	BCK1	Q01389	1478 aa		4.92	□□□□□ -1.62
PIM1	YBL022C	NMD2	P38798	1089 aa	Known RBP	4.92	□□□□□ -1.62
PIM1	YBL022C	HEF3	P53978	1044 aa	Known RBP	4.92	□□□□□ -1.62
PIM1	YBL022C	PLP2	Q12017	286 aa		4.91	□□□□□ -1.62
PIM1	YBL022C	AIM44	Q99299	758 aa		4.91	□□□□□ -1.62
PIM1	YBL022C	TRL1	P09880	827 aa	Known RBP	4.91	□□□□□ -1.62
PIM1	YBL022C	MSH3	P25336	1018 aa		4.91	□□□□□ -1.62
PIM1	YBL022C	BDH2	P39713	417 aa		4.91	□□□□□ -1.62
PIM1	YBL022C	POL32	P47110	350 aa		4.91	□□□□□ -1.62
PIM1	YBL022C	LCD1	Q04377	747 aa		4.91	□□□□□ -1.62
PIM1	YBL022C	SML1	Q04964	104 aa		4.91	□□□□□ -1.62
PIM1	YBL022C	SAP190	P36123	1033 aa		4.9	□□□□□ -1.62
PIM1	YBL022C	KRE5	P22023	1365 aa		4.9	□□□□□ -1.62
PIM1	YBL022C	YDL144C	Q07589	356 aa		4.9	□□□□□ -1.63
PIM1	YBL022C	LTV1	P34078	463 aa		4.89	□□□□□ -1.63
PIM1	YBL022C	RSC1	P53236	928 aa		4.89	□□□□□ -1.63
PIM1	YBL022C	ORM2	Q06144	216 aa		4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 34.5 ms