RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.66□□□□□ -0.86
VIPAS39-204ENST00000553576 CC2D2AQ9P2K1 1620 aa9.65□□□□□ -0.86
VIPAS39-204ENST00000553576 CFTRP13569 1480 aa9.65□□□□□ -0.87
VIPAS39-204ENST00000553576 SYNJ1O43426 1573 aa9.64□□□□□ -0.87
VIPAS39-204ENST00000553576 FAM9AQ8IZU1 332 aaPredicted RBP9.64□□□□□ -0.87
VIPAS39-204ENST00000553576 TOP2BQ02880 1626 aa9.64□□□□□ -0.87
VIPAS39-204ENST00000553576 BIVM-ERCC5R4GMW8 1640 aa9.64□□□□□ -0.87
VIPAS39-204ENST00000553576 GSE1Q14687 1217 aa9.62□□□□□ -0.87
VIPAS39-204ENST00000553576 ILDR1Q86SU0 546 aaPredicted RBP9.62□□□□□ -0.87
VIPAS39-204ENST00000553576 PSEN1P49768 467 aa9.61□□□□□ -0.87
VIPAS39-204ENST00000553576 SOGA1O94964 1423 aa9.6□□□□□ -0.87
VIPAS39-204ENST00000553576 CHRM1P11229 460 aaPredicted RBP9.6□□□□□ -0.87
VIPAS39-204ENST00000553576 HOXB3P14651 431 aaPredicted RBP9.58□□□□□ -0.88
VIPAS39-204ENST00000553576 DPY19L2Q6NUT2 758 aa9.58□□□□□ -0.88
VIPAS39-204ENST00000553576 FBXO3Q9UK99 471 aa9.58□□□□□ -0.88
VIPAS39-204ENST00000553576 CADPSQ9ULU8 1353 aa9.57□□□□□ -0.88
VIPAS39-204ENST00000553576 RUSC2Q8N2Y8 1516 aa9.56□□□□□ -0.88
VIPAS39-204ENST00000553576 TNIKQ9UKE5 1360 aa9.56□□□□□ -0.88
VIPAS39-204ENST00000553576 KIF21BO75037 1637 aa9.55□□□□□ -0.88
VIPAS39-204ENST00000553576 HOXB1P14653 301 aaPredicted RBP9.54□□□□□ -0.88
VIPAS39-204ENST00000553576 KLHL34Q8N239 644 aa9.54□□□□□ -0.88
VIPAS39-204ENST00000553576 BOLA1Q9Y3E2 137 aa9.54□□□□□ -0.88
VIPAS39-204ENST00000553576 CUX1P39880 1505 aa9.53□□□□□ -0.88
VIPAS39-204ENST00000553576 TRIM26Q12899 539 aaPredicted RBP9.53□□□□□ -0.88
VIPAS39-204ENST00000553576 PDAP1Q13442 181 aaKnown RBP9.53□□□□□ -0.88
VIPAS39-204ENST00000553576 GOLGA3Q08378 1498 aa9.52□□□□□ -0.89
VIPAS39-204ENST00000553576 G3V3G9 751 aa9.51□□□□□ -0.89
VIPAS39-204ENST00000553576 ZNF710Q8N1W2 664 aa9.51□□□□□ -0.89
VIPAS39-204ENST00000553576 CEP164Q9UPV0 1460 aa9.51□□□□□ -0.89
VIPAS39-204ENST00000553576 VASPP50552 380 aaPredicted RBP9.5□□□□□ -0.89
VIPAS39-204ENST00000553576 RNF166Q96A37 237 aaPredicted RBP9.5□□□□□ -0.89
VIPAS39-204ENST00000553576 PCGF6Q9BYE7 350 aa9.5□□□□□ -0.89
VIPAS39-204ENST00000553576 CABP2Q9NPB3 220 aa9.5□□□□□ -0.89
VIPAS39-204ENST00000553576 ERBB3P21860 1342 aa9.5□□□□□ -0.89
VIPAS39-204ENST00000553576 DOK7Q18PE1 504 aa9.48□□□□□ -0.89
VIPAS39-204ENST00000553576 LAMC3Q9Y6N6 1575 aa9.46□□□□□ -0.89
VIPAS39-204ENST00000553576 CEP162Q5TB80 1403 aa9.46□□□□□ -0.9
VIPAS39-204ENST00000553576 ERICH3Q5RHP9 1530 aa9.46□□□□□ -0.9
VIPAS39-204ENST00000553576 PRXQ9BXM0 1461 aa9.45□□□□□ -0.9
VIPAS39-204ENST00000553576 VARS2Q5ST30 1063 aaKnown RBP9.44□□□□□ -0.9
VIPAS39-204ENST00000553576 FANCD2Q9BXW9 1451 aa9.43□□□□□ -0.9
VIPAS39-204ENST00000553576 KIF27Q86VH2 1401 aa9.43□□□□□ -0.9
VIPAS39-204ENST00000553576 UBTFP17480 764 aaKnown RBP9.43□□□□□ -0.9
VIPAS39-204ENST00000553576 MYT1LQ9UL68 1186 aa9.43□□□□□ -0.9
VIPAS39-204ENST00000553576 RIMBP2O15034 1052 aa9.42□□□□□ -0.9
VIPAS39-204ENST00000553576 HRCP23327 699 aa9.42□□□□□ -0.9
VIPAS39-204ENST00000553576 DNMBPQ6XZF7 1577 aa9.41□□□□□ -0.9
VIPAS39-204ENST00000553576 RAPGEF2Q9Y4G8 1499 aa9.4□□□□□ -0.9
VIPAS39-204ENST00000553576 ZNF687Q8N1G0 1237 aa9.38□□□□□ -0.91
VIPAS39-204ENST00000553576 FGD5Q6ZNL6 1462 aa9.38□□□□□ -0.91
VIPAS39-204ENST00000553576 ZSWIM6Q9HCJ5 1215 aa9.37□□□□□ -0.91
VIPAS39-204ENST00000553576 NESP48681 1621 aa9.37□□□□□ -0.91
VIPAS39-204ENST00000553576 IGF1RP08069 1367 aa9.37□□□□□ -0.91
VIPAS39-204ENST00000553576 TOPBP1Q92547 1522 aa9.36□□□□□ -0.91
VIPAS39-204ENST00000553576 CIZ1Q9ULV3 898 aaPredicted RBP9.36□□□□□ -0.91
VIPAS39-204ENST00000553576 PDS5BQ9NTI5 1447 aa9.36□□□□□ -0.91
VIPAS39-204ENST00000553576 CLIP1P30622 1438 aa9.35□□□□□ -0.91
VIPAS39-204ENST00000553576 TMEM92Q6UXU6 159 aa9.35□□□□□ -0.91
VIPAS39-204ENST00000553576 ABCA10Q8WWZ4 1543 aa9.35□□□□□ -0.91
VIPAS39-204ENST00000553576 EFCAB3Q8N7B9 438 aa9.34□□□□□ -0.91
VIPAS39-204ENST00000553576 CUX2O14529 1486 aa9.34□□□□□ -0.91
VIPAS39-204ENST00000553576 PTGER2P43116 358 aa9.33□□□□□ -0.92
VIPAS39-204ENST00000553576 GPR153Q6NV75 609 aa9.33□□□□□ -0.92
VIPAS39-204ENST00000553576 MICALL2Q8IY33 904 aa9.33□□□□□ -0.92
VIPAS39-204ENST00000553576 SPOCK2Q92563 424 aa9.33□□□□□ -0.92
VIPAS39-204ENST00000553576 POLA1P09884 1462 aaPredicted RBP9.32□□□□□ -0.92
VIPAS39-204ENST00000553576 KIF21AQ7Z4S6 1674 aa9.32□□□□□ -0.92
VIPAS39-204ENST00000553576 VPS8Q8N3P4 1428 aa9.31□□□□□ -0.92
VIPAS39-204ENST00000553576 WDR97A6NE52 1622 aa9.31□□□□□ -0.92
VIPAS39-204ENST00000553576 URB2Q14146 1524 aaKnown RBP9.31□□□□□ -0.92
VIPAS39-204ENST00000553576 CARMIL1Q5VZK9 1371 aa9.3□□□□□ -0.92
VIPAS39-204ENST00000553576 IFNLR1Q8IU57 520 aaPredicted RBP9.3□□□□□ -0.92
VIPAS39-204ENST00000553576 CUL7Q14999 1698 aa9.29□□□□□ -0.92
VIPAS39-204ENST00000553576 ZEB1P37275 1124 aaPredicted RBP9.28□□□□□ -0.92
VIPAS39-204ENST00000553576 RAD54L2Q9Y4B4 1467 aa9.27□□□□□ -0.93
VIPAS39-204ENST00000553576 ANKRD13DQ6ZTN6 518 aa9.26□□□□□ -0.93
VIPAS39-204ENST00000553576 ABCA5Q8WWZ7 1642 aa9.25□□□□□ -0.93
VIPAS39-204ENST00000553576 ARAP1Q96P48 1450 aa9.25□□□□□ -0.93
VIPAS39-204ENST00000553576 TARBP1Q13395 1621 aaKnown RBP9.24□□□□□ -0.93
VIPAS39-204ENST00000553576 ARSIQ5FYB1 569 aa9.24□□□□□ -0.93
VIPAS39-204ENST00000553576 ARHGAP35Q9NRY4 1499 aa9.23□□□□□ -0.93
VIPAS39-204ENST00000553576 PPARGC1BQ86YN6 1023 aaKnown RBP9.23□□□□□ -0.93
VIPAS39-204ENST00000553576 MS4A4AQ96JQ5 239 aa9.23□□□□□ -0.93
VIPAS39-204ENST00000553576 CTTNBP2Q8WZ74 1663 aa9.22□□□□□ -0.93
VIPAS39-204ENST00000553576 ZNF316A6NFI3 1004 aaPredicted RBP9.21□□□□□ -0.94
VIPAS39-204ENST00000553576 SOX12O15370 315 aa9.21□□□□□ -0.94
VIPAS39-204ENST00000553576 LSM11P83369 360 aaKnown RBP eCLIP9.21□□□□□ -0.94
VIPAS39-204ENST00000553576 GAPVD1Q14C86 1478 aa9.21□□□□□ -0.94
VIPAS39-204ENST00000553576 MRC2Q9UBG0 1479 aa9.21□□□□□ -0.94
VIPAS39-204ENST00000553576 MAP3K1Q13233 1512 aa9.21□□□□□ -0.94
VIPAS39-204ENST00000553576 KHSRPQ92945 711 aaKnown RBP eCLIP9.2□□□□□ -0.94
VIPAS39-204ENST00000553576 PHF8Q9UPP1 1060 aa9.18□□□□□ -0.94
VIPAS39-204ENST00000553576 EFCAB5A4FU69 1503 aa9.17□□□□□ -0.94
VIPAS39-204ENST00000553576 WDR62O43379 1518 aa9.17□□□□□ -0.94
VIPAS39-204ENST00000553576 PBRM1Q86U86 1689 aa9.16□□□□□ -0.94
VIPAS39-204ENST00000553576 TDRD9Q8NDG6 1382 aaKnown RBP9.15□□□□□ -0.94
VIPAS39-204ENST00000553576 FHAD1B1AJZ9 1412 aa9.14□□□□□ -0.95
VIPAS39-204ENST00000553576 PLA2G2EQ9NZK7 142 aa9.14□□□□□ -0.95
VIPAS39-204ENST00000553576 AQRO60306 1485 aaKnown RBP eCLIP9.14□□□□□ -0.952e-6■■■■■ 28.9
VIPAS39-204ENST00000553576 IFT140Q96RY7 1462 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms