RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 AEBP2Q6ZN18 517 aaPredicted RBP21.83■■□□□ 1.09
VIPAS39-204ENST00000553576 CHIC1Q5VXU3 224 aa20.38■□□□□ 0.85
VIPAS39-204ENST00000553576 SENP3Q9H4L4 574 aaPredicted RBP18.67■□□□□ 0.58
VIPAS39-204ENST00000553576 PHF23Q9BUL5 403 aaPredicted RBP18.36■□□□□ 0.53
VIPAS39-204ENST00000553576 FOXD1Q16676 465 aa17.46■□□□□ 0.39
VIPAS39-204ENST00000553576 POTEDQ86YR6 584 aa16.8■□□□□ 0.28
VIPAS39-204ENST00000553576 MSH5O43196 834 aa16.49■□□□□ 0.23
VIPAS39-204ENST00000553576 PIAS4Q8N2W9 510 aaPredicted RBP16.21■□□□□ 0.19
VIPAS39-204ENST00000553576 PLPPR3Q6T4P5 718 aa16.04■□□□□ 0.16
VIPAS39-204ENST00000553576 PPP6R1Q9UPN7 881 aa16.01■□□□□ 0.15
VIPAS39-204ENST00000553576 ADRA2BP18089 450 aa15.93■□□□□ 0.14
VIPAS39-204ENST00000553576 MAPK8IP2Q13387 824 aaPredicted RBP14.75□□□□□ -0.05
VIPAS39-204ENST00000553576 DMRT2Q9Y5R5 561 aa14.75□□□□□ -0.05
VIPAS39-204ENST00000553576 SCAF1Q9H7N4 1312 aaKnown RBP14.55□□□□□ -0.08
VIPAS39-204ENST00000553576 CACNB1Q02641 598 aaPredicted RBP14.39□□□□□ -0.11
VIPAS39-204ENST00000553576 DCAF8L1A6NGE4 600 aa14.14□□□□□ -0.15
VIPAS39-204ENST00000553576 RNF39Q9H2S5 420 aa14.05□□□□□ -0.16
VIPAS39-204ENST00000553576 HOXD11P31277 338 aaPredicted RBP14.04□□□□□ -0.16
VIPAS39-204ENST00000553576 PPP4R3CPQ6ZMV5 832 aa14.01□□□□□ -0.17
VIPAS39-204ENST00000553576 CNKSR2Q8WXI2 1034 aa13.84□□□□□ -0.19
VIPAS39-204ENST00000553576 RNF216Q9NWF9 866 aaPredicted RBP13.82□□□□□ -0.2
VIPAS39-204ENST00000553576 C1QBPQ07021 282 aaKnown RBP13.8□□□□□ -0.2
VIPAS39-204ENST00000553576 DNAJC5BQ9UF47 199 aa13.64□□□□□ -0.23
VIPAS39-204ENST00000553576 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.37□□□□□ -0.27
VIPAS39-204ENST00000553576 NCBP3Q53F19 620 aaKnown RBP13.33□□□□□ -0.28
VIPAS39-204ENST00000553576 NISCHQ9Y2I1 1504 aa13.24□□□□□ -0.29
VIPAS39-204ENST00000553576 NPM3O75607 178 aaKnown RBP13.17□□□□□ -0.3
VIPAS39-204ENST00000553576 POTEHQ6S545 545 aa13.08□□□□□ -0.32
VIPAS39-204ENST00000553576 U3KPZ7 1027 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-204ENST00000553576 DSG3P32926 999 aa13.01□□□□□ -0.33
VIPAS39-204ENST00000553576 SPINK5Q9NQ38 1064 aaPredicted RBP12.99□□□□□ -0.33
VIPAS39-204ENST00000553576 CAPN15O75808 1086 aa12.97□□□□□ -0.33
VIPAS39-204ENST00000553576 SLC4A2P04920 1241 aa12.69□□□□□ -0.38
VIPAS39-204ENST00000553576 TRHP20396 242 aaPredicted RBP12.67□□□□□ -0.38
VIPAS39-204ENST00000553576 ABCB7O75027 752 aa12.65□□□□□ -0.38
VIPAS39-204ENST00000553576 ZNF219Q9P2Y4 722 aaPredicted RBP12.64□□□□□ -0.39
VIPAS39-204ENST00000553576 APLP2Q06481 763 aa12.63□□□□□ -0.39
VIPAS39-204ENST00000553576 KCNA4P22459 653 aa12.55□□□□□ -0.4
VIPAS39-204ENST00000553576 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.52□□□□□ -0.41
VIPAS39-204ENST00000553576 HNRNPUL2Q1KMD3 747 aaKnown RBP12.52□□□□□ -0.41
VIPAS39-204ENST00000553576 SAMD1Q6SPF0 538 aaPredicted RBP12.44□□□□□ -0.42
VIPAS39-204ENST00000553576 RBM42Q9BTD8 480 aaKnown RBP12.41□□□□□ -0.42
VIPAS39-204ENST00000553576 CHRDL2Q6WN34 429 aa12.31□□□□□ -0.44
VIPAS39-204ENST00000553576 POLA2Q14181 598 aa12.24□□□□□ -0.45
VIPAS39-204ENST00000553576 MYCNP04198 464 aaPredicted RBP12.18□□□□□ -0.46
VIPAS39-204ENST00000553576 SP7Q8TDD2 431 aaPredicted RBP12.07□□□□□ -0.48
VIPAS39-204ENST00000553576 AKT1S1Q96B36 256 aa12.04□□□□□ -0.48
VIPAS39-204ENST00000553576 ZBTB12Q9Y330 459 aaPredicted RBP11.96□□□□□ -0.49
VIPAS39-204ENST00000553576 ATF5Q9Y2D1 282 aaPredicted RBP11.95□□□□□ -0.5
VIPAS39-204ENST00000553576 REM2Q8IYK8 340 aaPredicted RBP11.94□□□□□ -0.5
VIPAS39-204ENST00000553576 PIP4P2Q8N4L2 257 aa11.94□□□□□ -0.5
VIPAS39-204ENST00000553576 OSCARQ8IYS5 282 aa11.88□□□□□ -0.51
VIPAS39-204ENST00000553576 FOXD4L1Q9NU39 408 aa11.83□□□□□ -0.52
VIPAS39-204ENST00000553576 PITPNM1O00562 1244 aa11.82□□□□□ -0.52
VIPAS39-204ENST00000553576 HAX1O00165 279 aa11.81□□□□□ -0.52
VIPAS39-204ENST00000553576 FXR2P51116 673 aaKnown RBP eCLIP11.8□□□□□ -0.52
VIPAS39-204ENST00000553576 SLC4A1APQ9BWU0 796 aaKnown RBP11.75□□□□□ -0.53
VIPAS39-204ENST00000553576 EVX2Q03828 476 aa11.66□□□□□ -0.54
VIPAS39-204ENST00000553576 SPDYE2BA6NHP3 402 aa11.56□□□□□ -0.56
VIPAS39-204ENST00000553576 SPDYE6P0CI01 402 aa11.56□□□□□ -0.56
VIPAS39-204ENST00000553576 SPDYE2Q495Y8 402 aa11.56□□□□□ -0.56
VIPAS39-204ENST00000553576 ZBTB22O15209 634 aa11.55□□□□□ -0.56
VIPAS39-204ENST00000553576 CCDC180Q9P1Z9 1646 aa11.51□□□□□ -0.57
VIPAS39-204ENST00000553576 ATXN8OSP0DMR3 200 aa11.51□□□□□ -0.57
VIPAS39-204ENST00000553576 PRKAR2AP13861 404 aaKnown RBP11.5□□□□□ -0.57
VIPAS39-204ENST00000553576 FBLN2P98095 1184 aa11.48□□□□□ -0.57
VIPAS39-204ENST00000553576 SPDYE1Q8NFV5 336 aaPredicted RBP11.45□□□□□ -0.58
VIPAS39-204ENST00000553576 CLEC11AQ9Y240 323 aa11.44□□□□□ -0.58
VIPAS39-204ENST00000553576 C19orf67A6NJJ6 358 aa11.43□□□□□ -0.58
VIPAS39-204ENST00000553576 MKRN4PQ13434 485 aaPredicted RBP11.38□□□□□ -0.59
VIPAS39-204ENST00000553576 SSUH2Q9Y2M2 353 aa11.37□□□□□ -0.59
VIPAS39-204ENST00000553576 GABBR2O75899 941 aa11.36□□□□□ -0.59
VIPAS39-204ENST00000553576 ZNF692Q9BU19 519 aaPredicted RBP11.35□□□□□ -0.59
VIPAS39-204ENST00000553576 LHX8Q68G74 356 aa11.31□□□□□ -0.6
VIPAS39-204ENST00000553576 CHADLQ6NUI6 762 aa11.29□□□□□ -0.6
VIPAS39-204ENST00000553576 PRR29P0C7W0 189 aa11.19□□□□□ -0.62
VIPAS39-204ENST00000553576 PABPN1Q86U42 306 aaKnown RBP eCLIP11.17□□□□□ -0.62
VIPAS39-204ENST00000553576 ZCCHC6Q5VYS8 1495 aaKnown RBP11.14□□□□□ -0.63
VIPAS39-204ENST00000553576 POTEIP0CG38 1075 aa11.13□□□□□ -0.63
VIPAS39-204ENST00000553576 CD44P16070 742 aaKnown RBP11.12□□□□□ -0.63
VIPAS39-204ENST00000553576 FARP1Q9Y4F1 1045 aaPredicted RBP11.07□□□□□ -0.64
VIPAS39-204ENST00000553576 CLCN6P51797 869 aa11.03□□□□□ -0.64
VIPAS39-204ENST00000553576 DCAF1Q9Y4B6 1507 aa11.01□□□□□ -0.65
VIPAS39-204ENST00000553576 DCBLD2Q96PD2 775 aa10.96□□□□□ -0.65
VIPAS39-204ENST00000553576 ZNF579Q8NAF0 562 aaKnown RBP10.93□□□□□ -0.66
VIPAS39-204ENST00000553576 PLSCR2Q9NRY7 297 aa10.93□□□□□ -0.66
VIPAS39-204ENST00000553576 ZRANB1Q9UGI0 708 aa10.89□□□□□ -0.67
VIPAS39-204ENST00000553576 CREBZFQ9NS37 354 aa10.84□□□□□ -0.67
VIPAS39-204ENST00000553576 MYO15BQ96JP2 1530 aa10.84□□□□□ -0.67
VIPAS39-204ENST00000553576 GALR2O43603 387 aaPredicted RBP10.83□□□□□ -0.68
VIPAS39-204ENST00000553576 OTUD5Q96G74 571 aa10.79□□□□□ -0.68
VIPAS39-204ENST00000553576 SHROOM4Q9ULL8 1493 aa10.77□□□□□ -0.69
VIPAS39-204ENST00000553576 STAG3Q9UJ98 1225 aa10.76□□□□□ -0.69
VIPAS39-204ENST00000553576 POTEB2H3BUK9 544 aa10.75□□□□□ -0.69
VIPAS39-204ENST00000553576 DCAF8L2P0C7V8 631 aa10.75□□□□□ -0.69
VIPAS39-204ENST00000553576 PHF12Q96QT6 1004 aa10.71□□□□□ -0.69
VIPAS39-204ENST00000553576 PAK3O75914 559 aaPredicted RBP10.7□□□□□ -0.7
VIPAS39-204ENST00000553576 POTEMA6NI47 508 aa10.67□□□□□ -0.7
VIPAS39-204ENST00000553576 NACADO15069 1562 aa10.66□□□□□ -0.7
VIPAS39-204ENST00000553576 PELP1Q8IZL8 1130 aaKnown RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 221.8 ms