RNA–Protein interactions for RNA: ENST00000507875.5

CLCN3-206, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2

Gene CLCN3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-206ENST00000507875 ZMYND15Q9H091 742 aa11.18□□□□□ -0.62
CLCN3-206ENST00000507875 PLEKHG5O94827 1062 aa11.17□□□□□ -0.62
CLCN3-206ENST00000507875 IL27Q8NEV9 243 aa11.17□□□□□ -0.62
CLCN3-206ENST00000507875 WDR70Q9NW82 654 aa11.17□□□□□ -0.62
CLCN3-206ENST00000507875 SOGA1O94964 1423 aa11.17□□□□□ -0.62
CLCN3-206ENST00000507875 CUL7Q14999 1698 aa11.15□□□□□ -0.62
CLCN3-206ENST00000507875 ABCA5Q8WWZ7 1642 aa11.15□□□□□ -0.62
CLCN3-206ENST00000507875 ERICH3Q5RHP9 1530 aa11.15□□□□□ -0.62
CLCN3-206ENST00000507875 ZNF608Q9ULD9 1512 aaPredicted RBP11.13□□□□□ -0.63
CLCN3-206ENST00000507875 PBRM1Q86U86 1689 aa11.11□□□□□ -0.63
CLCN3-206ENST00000507875 RUSC2Q8N2Y8 1516 aa11.11□□□□□ -0.63
CLCN3-206ENST00000507875 ZMYND10O75800 440 aa11.11□□□□□ -0.63
CLCN3-206ENST00000507875 PYGBP11216 843 aa11.11□□□□□ -0.63
CLCN3-206ENST00000507875 GOLGA3Q08378 1498 aa11.11□□□□□ -0.63
CLCN3-206ENST00000507875 RSPH6AQ9H0K4 717 aa11.1□□□□□ -0.63
CLCN3-206ENST00000507875 RAD54L2Q9Y4B4 1467 aa11.09□□□□□ -0.63
CLCN3-206ENST00000507875 PRXQ9BXM0 1461 aa11.09□□□□□ -0.63
CLCN3-206ENST00000507875 EIF4G3O43432 1585 aaKnown RBP11.08□□□□□ -0.63
CLCN3-206ENST00000507875 TESPA1A2RU30 521 aaPredicted RBP11.08□□□□□ -0.64
CLCN3-206ENST00000507875 RASEFQ8IZ41 740 aa11.08□□□□□ -0.64
CLCN3-206ENST00000507875 NECTIN2Q92692 538 aa11.08□□□□□ -0.64
CLCN3-206ENST00000507875 AQRO60306 1485 aaKnown RBP eCLIP11.07□□□□□ -0.64
CLCN3-206ENST00000507875 GAPVD1Q14C86 1478 aa11.07□□□□□ -0.64
CLCN3-206ENST00000507875 MKRN3Q13064 507 aaKnown RBP11.06□□□□□ -0.64
CLCN3-206ENST00000507875 RNF39Q9H2S5 420 aa11.05□□□□□ -0.64
CLCN3-206ENST00000507875 IGF1RP08069 1367 aa11.04□□□□□ -0.64
CLCN3-206ENST00000507875 TNIKQ9UKE5 1360 aa11.04□□□□□ -0.64
CLCN3-206ENST00000507875 TDRD9Q8NDG6 1382 aaKnown RBP11.04□□□□□ -0.64
CLCN3-206ENST00000507875 RAPGEF2Q9Y4G8 1499 aa11.03□□□□□ -0.64
CLCN3-206ENST00000507875 FAM9AQ8IZU1 332 aaPredicted RBP11.03□□□□□ -0.64
CLCN3-206ENST00000507875 GRIN2BQ13224 1484 aa11.03□□□□□ -0.64
CLCN3-206ENST00000507875 PPP1R37O75864 691 aa11.02□□□□□ -0.65
CLCN3-206ENST00000507875 APBB1O00213 710 aa11.01□□□□□ -0.65
CLCN3-206ENST00000507875 ARHGEF1Q92888 912 aaKnown RBP11.01□□□□□ -0.65
CLCN3-206ENST00000507875 CTTNBP2Q8WZ74 1663 aa11.01□□□□□ -0.65
CLCN3-206ENST00000507875 ADAMTS12P58397 1594 aa11□□□□□ -0.65
CLCN3-206ENST00000507875 FAM212AQ96EL1 285 aa11□□□□□ -0.65
CLCN3-206ENST00000507875 CARMIL1Q5VZK9 1371 aa11□□□□□ -0.65
CLCN3-206ENST00000507875 MNX1P50219 401 aaPredicted RBP10.99□□□□□ -0.65
CLCN3-206ENST00000507875 RYDENQ9NUL5 291 aaKnown RBP10.99□□□□□ -0.65
CLCN3-206ENST00000507875 SGIP1Q9BQI5 828 aa10.99□□□□□ -0.65
CLCN3-206ENST00000507875 KDM4CQ9H3R0 1056 aa10.99□□□□□ -0.65
CLCN3-206ENST00000507875 MAGI1Q96QZ7 1491 aaPredicted RBP10.99□□□□□ -0.65
CLCN3-206ENST00000507875 CHMP7Q8WUX9 453 aaPredicted RBP10.98□□□□□ -0.65
CLCN3-206ENST00000507875 DSG3P32926 999 aa10.98□□□□□ -0.65
CLCN3-206ENST00000507875 E2F4Q16254 413 aa10.98□□□□□ -0.65
CLCN3-206ENST00000507875 FHAD1B1AJZ9 1412 aa10.97□□□□□ -0.65
CLCN3-206ENST00000507875 SNAPC4Q5SXM2 1469 aa10.96□□□□□ -0.65
CLCN3-206ENST00000507875 MFRPQ9BY79 579 aa10.96□□□□□ -0.65
CLCN3-206ENST00000507875 LOC105371045A0A1W2PR82 267 aa10.96□□□□□ -0.66
CLCN3-206ENST00000507875 BARGINQ6ZT62 677 aa10.96□□□□□ -0.66
CLCN3-206ENST00000507875 RBM26Q5T8P6 1007 aaKnown RBP10.95□□□□□ -0.66
CLCN3-206ENST00000507875 CHD1O14646 1710 aa10.95□□□□□ -0.66
CLCN3-206ENST00000507875 SYNJ2O15056 1496 aa10.93□□□□□ -0.66
CLCN3-206ENST00000507875 CHRM1P11229 460 aaPredicted RBP10.93□□□□□ -0.66
CLCN3-206ENST00000507875 ARHGEF11O15085 1522 aa10.92□□□□□ -0.66
CLCN3-206ENST00000507875 RIMBP3CA6NJZ7 1639 aa10.92□□□□□ -0.66
CLCN3-206ENST00000507875 RIMBP3BA6NNM3 1639 aa10.92□□□□□ -0.66
CLCN3-206ENST00000507875 RIMBP3Q9UFD9 1639 aa10.92□□□□□ -0.66
CLCN3-206ENST00000507875 FAM117AQ9C073 453 aa10.91□□□□□ -0.66
CLCN3-206ENST00000507875 CEP162Q5TB80 1403 aa10.91□□□□□ -0.66
CLCN3-206ENST00000507875 EFCAB5A4FU69 1503 aa10.9□□□□□ -0.67
CLCN3-206ENST00000507875 CREBZFQ9NS37 354 aa10.9□□□□□ -0.67
CLCN3-206ENST00000507875 MLLT3P42568 568 aaPredicted RBP10.89□□□□□ -0.67
CLCN3-206ENST00000507875 NCKAP5LQ9HCH0 1330 aa10.87□□□□□ -0.67
CLCN3-206ENST00000507875 GRIN2AQ12879 1464 aa10.87□□□□□ -0.67
CLCN3-206ENST00000507875 CYB5RLQ6IPT4 315 aa10.87□□□□□ -0.67
CLCN3-206ENST00000507875 CCDC82Q8N4S0 544 aa10.86□□□□□ -0.67
CLCN3-206ENST00000507875 AK7Q96M32 723 aa10.86□□□□□ -0.67
CLCN3-206ENST00000507875 CLIP1P30622 1438 aa10.86□□□□□ -0.67
CLCN3-206ENST00000507875 CLASP1Q7Z460 1538 aa10.85□□□□□ -0.67
CLCN3-206ENST00000507875 PDIA4P13667 645 aaKnown RBP10.85□□□□□ -0.67
CLCN3-206ENST00000507875 IQGAP2Q13576 1575 aa10.85□□□□□ -0.67
CLCN3-206ENST00000507875 PDE4DQ08499 809 aa10.84□□□□□ -0.67
CLCN3-206ENST00000507875 CLUAP1Q96AJ1 413 aa10.84□□□□□ -0.67
CLCN3-206ENST00000507875 TRIM66O15016 1216 aa10.84□□□□□ -0.67
CLCN3-206ENST00000507875 PCDHB8Q9UN66 801 aa10.84□□□□□ -0.67
CLCN3-206ENST00000507875 PCDHB13Q9Y5F0 798 aa10.84□□□□□ -0.67
CLCN3-206ENST00000507875 SAMD9Q5K651 1589 aa10.84□□□□□ -0.67
CLCN3-206ENST00000507875 KRI1Q8N9T8 703 aaKnown RBP10.83□□□□□ -0.68
CLCN3-206ENST00000507875 KIAA0586Q9BVV6 1533 aa10.83□□□□□ -0.68
CLCN3-206ENST00000507875 CCDC9Q9Y3X0 531 aaKnown RBP10.82□□□□□ -0.68
CLCN3-206ENST00000507875 UGGT2Q9NYU1 1516 aa10.82□□□□□ -0.68
CLCN3-206ENST00000507875 NUP160Q12769 1436 aa10.82□□□□□ -0.68
CLCN3-206ENST00000507875 PLEKHG3A1L390 1219 aa10.81□□□□□ -0.68
CLCN3-206ENST00000507875 ZBTB7CA1YPR0 619 aa10.81□□□□□ -0.68
CLCN3-206ENST00000507875 ARAP1Q96P48 1450 aa10.81□□□□□ -0.68
CLCN3-206ENST00000507875 CEP170Q5SW79 1584 aa10.79□□□□□ -0.68
CLCN3-206ENST00000507875 ZNF316A6NFI3 1004 aaPredicted RBP10.79□□□□□ -0.68
CLCN3-206ENST00000507875 VPS8Q8N3P4 1428 aa10.79□□□□□ -0.68
CLCN3-206ENST00000507875 ARHGAP35Q9NRY4 1499 aa10.79□□□□□ -0.68
CLCN3-206ENST00000507875 C1QBPQ07021 282 aaKnown RBP10.78□□□□□ -0.68
CLCN3-206ENST00000507875 GPIHBP1Q8IV16 184 aa10.78□□□□□ -0.68
CLCN3-206ENST00000507875 LARP6Q9BRS8 491 aaKnown RBP10.78□□□□□ -0.68
CLCN3-206ENST00000507875 ZNF428Q96B54 188 aa10.76□□□□□ -0.69
CLCN3-206ENST00000507875 SHROOM2Q13796 1616 aa10.76□□□□□ -0.69
CLCN3-206ENST00000507875 MAP3K1Q13233 1512 aa10.75□□□□□ -0.69
CLCN3-206ENST00000507875 CLEC11AQ9Y240 323 aa10.75□□□□□ -0.69
CLCN3-206ENST00000507875 FBXO22Q8NEZ5 403 aa10.74□□□□□ -0.69
CLCN3-206ENST00000507875 PCGF6Q9BYE7 350 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms