RNA–Protein interactions for RNA: ENST00000507875.5

CLCN3-206, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2

Gene CLCN3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-206ENST00000507875 CHIC1Q5VXU3 224 aa19.27■□□□□ 0.68
CLCN3-206ENST00000507875 AEBP2Q6ZN18 517 aaPredicted RBP18.93■□□□□ 0.62
CLCN3-206ENST00000507875 PHF23Q9BUL5 403 aaPredicted RBP17.37■□□□□ 0.37
CLCN3-206ENST00000507875 EHMT2Q96KQ7 1210 aa16.12■□□□□ 0.17
CLCN3-206ENST00000507875 PLPPR3Q6T4P5 718 aa16.05■□□□□ 0.16
CLCN3-206ENST00000507875 NISCHQ9Y2I1 1504 aa15.79■□□□□ 0.12
CLCN3-206ENST00000507875 KCNA4P22459 653 aa15.65■□□□□ 0.1
CLCN3-206ENST00000507875 ADRA2BP18089 450 aa15.51■□□□□ 0.07
CLCN3-206ENST00000507875 SENP3Q9H4L4 574 aaPredicted RBP15.41■□□□□ 0.06
CLCN3-206ENST00000507875 CSRNP3Q8WYN3 585 aa15.27■□□□□ 0.04
CLCN3-206ENST00000507875 PPP6R1Q9UPN7 881 aa15.05■□□□□ 0
CLCN3-206ENST00000507875 SLC24A1O60721 1099 aa15.01□□□□□ -0.01
CLCN3-206ENST00000507875 SLC4A1APQ9BWU0 796 aaKnown RBP14.89□□□□□ -0.03
CLCN3-206ENST00000507875 RTN4Q9NQC3 1192 aaKnown RBP14.7□□□□□ -0.06
CLCN3-206ENST00000507875 ZBTB22O15209 634 aa14.55□□□□□ -0.08
CLCN3-206ENST00000507875 FOXD1Q16676 465 aa14.48□□□□□ -0.09
CLCN3-206ENST00000507875 PPP4R3CPQ6ZMV5 832 aa14.43□□□□□ -0.1
CLCN3-206ENST00000507875 NPM3O75607 178 aaKnown RBP14.27□□□□□ -0.12
CLCN3-206ENST00000507875 AMER1Q5JTC6 1135 aaPredicted RBP14.22□□□□□ -0.13
CLCN3-206ENST00000507875 NCBP3Q53F19 620 aaKnown RBP14.07□□□□□ -0.16
CLCN3-206ENST00000507875 CCDC180Q9P1Z9 1646 aa14□□□□□ -0.17
CLCN3-206ENST00000507875 PIAS4Q8N2W9 510 aaPredicted RBP13.87□□□□□ -0.19
CLCN3-206ENST00000507875 FOXD4L1Q9NU39 408 aa13.77□□□□□ -0.21
CLCN3-206ENST00000507875 FKBP8Q14318 412 aa13.69□□□□□ -0.22
CLCN3-206ENST00000507875 CNKSR2Q8WXI2 1034 aa13.62□□□□□ -0.23
CLCN3-206ENST00000507875 PRKCSHP14314 528 aaPredicted RBP13.55□□□□□ -0.24
CLCN3-206ENST00000507875 ABCC9O60706 1549 aa13.53□□□□□ -0.24
CLCN3-206ENST00000507875 MAPK8IP2Q13387 824 aaPredicted RBP13.39□□□□□ -0.27
CLCN3-206ENST00000507875 SLC4A2P04920 1241 aa13.28□□□□□ -0.28
CLCN3-206ENST00000507875 ZCCHC6Q5VYS8 1495 aaKnown RBP13.25□□□□□ -0.29
CLCN3-206ENST00000507875 PLCB2Q00722 1185 aa13.24□□□□□ -0.29
CLCN3-206ENST00000507875 DNAJC5BQ9UF47 199 aa13.21□□□□□ -0.29
CLCN3-206ENST00000507875 DCAF1Q9Y4B6 1507 aa13.21□□□□□ -0.3
CLCN3-206ENST00000507875 SCAF1Q9H7N4 1312 aaKnown RBP13.17□□□□□ -0.3
CLCN3-206ENST00000507875 HAP1P54257 671 aaPredicted RBP13.13□□□□□ -0.31
CLCN3-206ENST00000507875 TAOK2Q9UL54 1235 aa13.12□□□□□ -0.31
CLCN3-206ENST00000507875 MYO15BQ96JP2 1530 aa13.12□□□□□ -0.31
CLCN3-206ENST00000507875 RNF216Q9NWF9 866 aaPredicted RBP13.05□□□□□ -0.32
CLCN3-206ENST00000507875 NACADO15069 1562 aa12.99□□□□□ -0.33
CLCN3-206ENST00000507875 BCANQ96GW7 911 aa12.99□□□□□ -0.33
CLCN3-206ENST00000507875 RB1CC1Q8TDY2 1594 aa12.98□□□□□ -0.33
CLCN3-206ENST00000507875 TPRNQ4KMQ1 711 aa12.97□□□□□ -0.33
CLCN3-206ENST00000507875 ATF5Q9Y2D1 282 aaPredicted RBP12.96□□□□□ -0.33
CLCN3-206ENST00000507875 ATXN8OSP0DMR3 200 aa12.95□□□□□ -0.34
CLCN3-206ENST00000507875 DCAF8L2P0C7V8 631 aa12.93□□□□□ -0.34
CLCN3-206ENST00000507875 MYCNP04198 464 aaPredicted RBP12.92□□□□□ -0.34
CLCN3-206ENST00000507875 KDM2AQ9Y2K7 1162 aa12.85□□□□□ -0.35
CLCN3-206ENST00000507875 FBLN2P98095 1184 aa12.83□□□□□ -0.36
CLCN3-206ENST00000507875 TIMELESSQ9UNS1 1208 aa12.8□□□□□ -0.36
CLCN3-206ENST00000507875 HOXD11P31277 338 aaPredicted RBP12.73□□□□□ -0.37
CLCN3-206ENST00000507875 VSIG10Q8N0Z9 540 aa12.7□□□□□ -0.38
CLCN3-206ENST00000507875 TULP1O00294 542 aaPredicted RBP12.66□□□□□ -0.38
CLCN3-206ENST00000507875 PKD2Q13563 968 aa12.66□□□□□ -0.38
CLCN3-206ENST00000507875 IFNLR1Q8IU57 520 aaPredicted RBP12.63□□□□□ -0.39
CLCN3-206ENST00000507875 PABPN1Q86U42 306 aaKnown RBP eCLIP12.62□□□□□ -0.39
CLCN3-206ENST00000507875 UNC13AQ9UPW8 1703 aa12.61□□□□□ -0.39
CLCN3-206ENST00000507875 SCRIBQ14160 1630 aa12.61□□□□□ -0.39
CLCN3-206ENST00000507875 NPM1P06748 294 aaKnown RBP eCLIP12.56□□□□□ -0.4
CLCN3-206ENST00000507875 DMRT2Q9Y5R5 561 aa12.56□□□□□ -0.4
CLCN3-206ENST00000507875 VASPP50552 380 aaPredicted RBP12.55□□□□□ -0.4
CLCN3-206ENST00000507875 BICRAQ9NZM4 1560 aa12.52□□□□□ -0.41
CLCN3-206ENST00000507875 PAXIP1Q6ZW49 1069 aaPredicted RBP12.51□□□□□ -0.41
CLCN3-206ENST00000507875 CFAP44Q96MT7 982 aa12.5□□□□□ -0.41
CLCN3-206ENST00000507875 SHROOM4Q9ULL8 1493 aa12.5□□□□□ -0.41
CLCN3-206ENST00000507875 MSH5O43196 834 aa12.5□□□□□ -0.41
CLCN3-206ENST00000507875 DAXXQ9UER7 740 aaPredicted RBP12.49□□□□□ -0.41
CLCN3-206ENST00000507875 FBXO3Q9UK99 471 aa12.47□□□□□ -0.41
CLCN3-206ENST00000507875 TSHZ2Q9NRE2 1034 aa12.45□□□□□ -0.42
CLCN3-206ENST00000507875 SPDYE4A6NLX3 237 aa12.43□□□□□ -0.42
CLCN3-206ENST00000507875 GTF3C3Q9Y5Q9 886 aa12.37□□□□□ -0.43
CLCN3-206ENST00000507875 MKRN4PQ13434 485 aaPredicted RBP12.34□□□□□ -0.43
CLCN3-206ENST00000507875 BBXQ8WY36 941 aaPredicted RBP12.32□□□□□ -0.44
CLCN3-206ENST00000507875 PROM2Q8N271 834 aa12.32□□□□□ -0.44
CLCN3-206ENST00000507875 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.32□□□□□ -0.44
CLCN3-206ENST00000507875 ARXQ96QS3 562 aa12.29□□□□□ -0.44
CLCN3-206ENST00000507875 U3KPZ7 1027 aaPredicted RBP12.27□□□□□ -0.45
CLCN3-206ENST00000507875 ZNF219Q9P2Y4 722 aaPredicted RBP12.27□□□□□ -0.45
CLCN3-206ENST00000507875 BAZ1AQ9NRL2 1556 aaPredicted RBP12.25□□□□□ -0.45
CLCN3-206ENST00000507875 RGL2O15211 777 aa12.25□□□□□ -0.45
CLCN3-206ENST00000507875 EIF4G1Q04637 1599 aaKnown RBP12.24□□□□□ -0.45
CLCN3-206ENST00000507875 CC2D2AQ9P2K1 1620 aa12.22□□□□□ -0.45
CLCN3-206ENST00000507875 ECM2O94769 699 aaPredicted RBP12.21□□□□□ -0.45
CLCN3-206ENST00000507875 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.19□□□□□ -0.46
CLCN3-206ENST00000507875 CECR2Q9BXF3 1484 aa12.19□□□□□ -0.46
CLCN3-206ENST00000507875 SMARCA4P51532 1647 aa12.18□□□□□ -0.46
CLCN3-206ENST00000507875 DCAF8L1A6NGE4 600 aa12.18□□□□□ -0.46
CLCN3-206ENST00000507875 SAMD1Q6SPF0 538 aaPredicted RBP12.17□□□□□ -0.46
CLCN3-206ENST00000507875 SPRYD3Q8NCJ5 442 aa12.17□□□□□ -0.46
CLCN3-206ENST00000507875 RSF1Q96T23 1441 aaPredicted RBP12.13□□□□□ -0.47
CLCN3-206ENST00000507875 TMEM132AQ24JP5 1023 aa12.13□□□□□ -0.47
CLCN3-206ENST00000507875 NBR1Q14596 966 aa12.12□□□□□ -0.47
CLCN3-206ENST00000507875 PEG3Q9GZU2 1588 aa12.12□□□□□ -0.47
CLCN3-206ENST00000507875 MROH2BQ7Z745 1585 aa12.11□□□□□ -0.47
CLCN3-206ENST00000507875 CHGAP10645 457 aaKnown RBP12.04□□□□□ -0.48
CLCN3-206ENST00000507875 KLHL34Q8N239 644 aa12.04□□□□□ -0.48
CLCN3-206ENST00000507875 SMARCA2P51531 1590 aa12.04□□□□□ -0.48
CLCN3-206ENST00000507875 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.04□□□□□ -0.48
CLCN3-206ENST00000507875 HNRNPUL2Q1KMD3 747 aaKnown RBP12.04□□□□□ -0.48
CLCN3-206ENST00000507875 WIZO95785 1651 aa12.03□□□□□ -0.48
CLCN3-206ENST00000507875 HOMEZQ8IX15 550 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 137.4 ms