RNA–Protein interactions for RNA: ENST00000358528.8

CSDE1-203, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSDE1, Length 4,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-203ENST00000358528 HMGXB3Q12766 1538 aa8.77□□□□□ -1.01
CSDE1-203ENST00000358528 NEFMP07197 916 aa8.76□□□□□ -1.01
CSDE1-203ENST00000358528 CC2D1BQ5T0F9 858 aaKnown RBP8.76□□□□□ -1.01
CSDE1-203ENST00000358528 DCAF11Q8TEB1 546 aa8.76□□□□□ -1.01
CSDE1-203ENST00000358528 IPO9Q96P70 1041 aaKnown RBP8.75□□□□□ -1.01
CSDE1-203ENST00000358528 EXOC6Q8TAG9 804 aa8.75□□□□□ -1.01
CSDE1-203ENST00000358528 NESP48681 1621 aa8.74□□□□□ -1.01
CSDE1-203ENST00000358528 PLIN1O60240 522 aa8.74□□□□□ -1.01
CSDE1-203ENST00000358528 MAP3K1Q13233 1512 aa8.74□□□□□ -1.01
CSDE1-203ENST00000358528 TSPY4P0CV99 314 aa8.74□□□□□ -1.01
CSDE1-203ENST00000358528 TSPY10P0CW01 314 aa8.74□□□□□ -1.01
CSDE1-203ENST00000358528 ST20-MTHFSA0A0A6YYL1 179 aa8.72□□□□□ -1.01
CSDE1-203ENST00000358528 RCAN3Q9UKA8 241 aa8.72□□□□□ -1.01
CSDE1-203ENST00000358528 EIF5BO60841 1220 aaKnown RBP8.72□□□□□ -1.01
CSDE1-203ENST00000358528 USP47Q96K76 1375 aa8.72□□□□□ -1.01
CSDE1-203ENST00000358528 POLA1P09884 1462 aaPredicted RBP8.71□□□□□ -1.01
CSDE1-203ENST00000358528 PTPN23Q9H3S7 1636 aa8.71□□□□□ -1.02
CSDE1-203ENST00000358528 ARXQ96QS3 562 aa8.71□□□□□ -1.02
CSDE1-203ENST00000358528 RGS3P49796 1198 aa8.7□□□□□ -1.02
CSDE1-203ENST00000358528 SLC4A3P48751 1232 aa8.7□□□□□ -1.02
CSDE1-203ENST00000358528 PHF23Q9BUL5 403 aaPredicted RBP8.7□□□□□ -1.02
CSDE1-203ENST00000358528 SKAP1Q86WV1 359 aa8.7□□□□□ -1.02
CSDE1-203ENST00000358528 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.7□□□□□ -1.02
CSDE1-203ENST00000358528 CHMP7Q8WUX9 453 aaPredicted RBP8.7□□□□□ -1.02
CSDE1-203ENST00000358528 CANXP27824 592 aaKnown RBP8.69□□□□□ -1.02
CSDE1-203ENST00000358528 GAPVD1Q14C86 1478 aa8.69□□□□□ -1.02
CSDE1-203ENST00000358528 NUP155O75694 1391 aa8.69□□□□□ -1.02
CSDE1-203ENST00000358528 EFCAB5A4FU69 1503 aa8.68□□□□□ -1.02
CSDE1-203ENST00000358528 PDE4AP27815 886 aa8.68□□□□□ -1.02
CSDE1-203ENST00000358528 WDR43Q15061 677 aaKnown RBP eCLIP8.68□□□□□ -1.02
CSDE1-203ENST00000358528 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.68□□□□□ -1.02
CSDE1-203ENST00000358528 TOPBP1Q92547 1522 aa8.68□□□□□ -1.02
CSDE1-203ENST00000358528 PLEKHD1A6NEE1 506 aa8.68□□□□□ -1.02
CSDE1-203ENST00000358528 RRP1P56182 461 aaKnown RBP8.68□□□□□ -1.02
CSDE1-203ENST00000358528 CDCA7LQ96GN5 454 aa8.68□□□□□ -1.02
CSDE1-203ENST00000358528 CDK13Q14004 1512 aaKnown RBP8.66□□□□□ -1.02
CSDE1-203ENST00000358528 PRDM2Q13029 1718 aa8.66□□□□□ -1.02
CSDE1-203ENST00000358528 PNISRQ8TF01 805 aaKnown RBP8.66□□□□□ -1.02
CSDE1-203ENST00000358528 CFAP43Q8NDM7 1665 aa8.65□□□□□ -1.02
CSDE1-203ENST00000358528 IL27Q8NEV9 243 aa8.65□□□□□ -1.02
CSDE1-203ENST00000358528 DNAJC5BQ9UF47 199 aa8.65□□□□□ -1.02
CSDE1-203ENST00000358528 NCOA1Q15788 1441 aa8.65□□□□□ -1.02
CSDE1-203ENST00000358528 ROCK2O75116 1388 aaKnown RBP8.65□□□□□ -1.02
CSDE1-203ENST00000358528 TCERG1O14776 1098 aaKnown RBP8.65□□□□□ -1.02
CSDE1-203ENST00000358528 PDS5BQ9NTI5 1447 aa8.65□□□□□ -1.02
CSDE1-203ENST00000358528 HNRNPMP52272 730 aaKnown RBP eCLIP8.65□□□□□ -1.03
CSDE1-203ENST00000358528 SUPT6HQ7KZ85 1726 aaKnown RBP8.64□□□□□ -1.03
CSDE1-203ENST00000358528 CRBNQ96SW2 442 aa8.64□□□□□ -1.03
CSDE1-203ENST00000358528 MYBBP1AQ9BQG0 1328 aaKnown RBP8.64□□□□□ -1.03
CSDE1-203ENST00000358528 PPM1GO15355 546 aaPredicted RBP8.64□□□□□ -1.03
CSDE1-203ENST00000358528 KTN1Q86UP2 1357 aaKnown RBP8.63□□□□□ -1.03
CSDE1-203ENST00000358528 ANKRD30BQ9BXX2 1392 aa8.63□□□□□ -1.03
CSDE1-203ENST00000358528 EHBP1L1Q8N3D4 1523 aa8.63□□□□□ -1.03
CSDE1-203ENST00000358528 ABCA10Q8WWZ4 1543 aa8.63□□□□□ -1.03
CSDE1-203ENST00000358528 RALBP1Q15311 655 aa8.63□□□□□ -1.03
CSDE1-203ENST00000358528 KIF15Q9NS87 1388 aa8.63□□□□□ -1.03
CSDE1-203ENST00000358528 NEUROD2Q15784 382 aa8.63□□□□□ -1.03
CSDE1-203ENST00000358528 NLRP13Q86W25 1043 aa8.63□□□□□ -1.03
CSDE1-203ENST00000358528 SMG6Q86US8 1419 aaKnown RBP8.63□□□□□ -1.03
CSDE1-203ENST00000358528 DDRGK1Q96HY6 314 aa8.62□□□□□ -1.03
CSDE1-203ENST00000358528 ANO8Q9HCE9 1232 aaPredicted RBP8.62□□□□□ -1.03
CSDE1-203ENST00000358528 KNSTRNQ9Y448 316 aa8.62□□□□□ -1.03
CSDE1-203ENST00000358528 DNMBPQ6XZF7 1577 aa8.61□□□□□ -1.03
CSDE1-203ENST00000358528 SNAPC4Q5SXM2 1469 aa8.61□□□□□ -1.03
CSDE1-203ENST00000358528 ANKRD30AQ9BXX3 1397 aa8.61□□□□□ -1.03
CSDE1-203ENST00000358528 PANK3Q9H999 370 aa8.61□□□□□ -1.03
CSDE1-203ENST00000358528 CCDC146Q8IYE0 955 aa8.6□□□□□ -1.03
CSDE1-203ENST00000358528 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.6□□□□□ -1.03
CSDE1-203ENST00000358528 DAPK1P53355 1430 aa8.6□□□□□ -1.03
CSDE1-203ENST00000358528 TNNT2P45379 298 aaPredicted RBP8.6□□□□□ -1.03
CSDE1-203ENST00000358528 NBPF1Q3BBV0 1214 aa8.6□□□□□ -1.03
CSDE1-203ENST00000358528 EPRSP07814 1512 aaKnown RBP8.6□□□□□ -1.03
CSDE1-203ENST00000358528 CC2D2AQ9P2K1 1620 aa8.59□□□□□ -1.03
CSDE1-203ENST00000358528 CHGAP10645 457 aaKnown RBP8.59□□□□□ -1.03
CSDE1-203ENST00000358528 FRAT1Q92837 279 aaPredicted RBP8.59□□□□□ -1.04
CSDE1-203ENST00000358528 GRIN2BQ13224 1484 aa8.58□□□□□ -1.04
CSDE1-203ENST00000358528 TMF1P82094 1093 aa8.58□□□□□ -1.04
CSDE1-203ENST00000358528 RPRD2Q5VT52 1461 aaKnown RBP8.58□□□□□ -1.04
CSDE1-203ENST00000358528 PRG4Q92954 1404 aaPredicted RBP8.58□□□□□ -1.04
CSDE1-203ENST00000358528 KDM6BO15054 1643 aa8.58□□□□□ -1.04
CSDE1-203ENST00000358528 ABCC5O15440 1437 aa8.57□□□□□ -1.04
CSDE1-203ENST00000358528 BACH2Q9BYV9 841 aa8.57□□□□□ -1.04
CSDE1-203ENST00000358528 SPRYD3Q8NCJ5 442 aa8.57□□□□□ -1.04
CSDE1-203ENST00000358528 MIA2Q96PC5 1412 aa8.57□□□□□ -1.04
CSDE1-203ENST00000358528 UGGT2Q9NYU1 1516 aa8.56□□□□□ -1.04
CSDE1-203ENST00000358528 ANKRD50Q9ULJ7 1429 aa8.56□□□□□ -1.04
CSDE1-203ENST00000358528 C20orf194Q5TEA3 1177 aa8.56□□□□□ -1.04
CSDE1-203ENST00000358528 CUL7Q14999 1698 aa8.56□□□□□ -1.04
CSDE1-203ENST00000358528 PDE3BQ13370 1112 aa8.56□□□□□ -1.04
CSDE1-203ENST00000358528 SLKQ9H2G2 1235 aaPredicted RBP8.56□□□□□ -1.04
CSDE1-203ENST00000358528 BRPF3Q9ULD4 1205 aa8.56□□□□□ -1.04
CSDE1-203ENST00000358528 THOC2Q8NI27 1593 aaKnown RBP8.56□□□□□ -1.04
CSDE1-203ENST00000358528 URB2Q14146 1524 aaKnown RBP8.55□□□□□ -1.04
CSDE1-203ENST00000358528 MAGI3Q5TCQ9 1506 aa8.55□□□□□ -1.04
CSDE1-203ENST00000358528 ADAMTS8Q9UP79 889 aa8.55□□□□□ -1.04
CSDE1-203ENST00000358528 CTTNBP2Q8WZ74 1663 aa8.55□□□□□ -1.04
CSDE1-203ENST00000358528 KIAA1107Q9UPP5 1409 aa8.55□□□□□ -1.04
CSDE1-203ENST00000358528 BRD4O60885 1362 aaPredicted RBP8.55□□□□□ -1.04
CSDE1-203ENST00000358528 DHX29Q7Z478 1369 aaKnown RBP8.54□□□□□ -1.04
CSDE1-203ENST00000358528 HECW1Q76N89 1606 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms