RNA–Protein interactions for RNA: ENST00000358528.8

CSDE1-203, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSDE1, Length 4,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-203ENST00000358528 NISCHQ9Y2I1 1504 aa12.32□□□□□ -0.44
CSDE1-203ENST00000358528 SHROOM4Q9ULL8 1493 aa11.36□□□□□ -0.59
CSDE1-203ENST00000358528 SUPT5HO00267 1087 aaKnown RBP11.32□□□□□ -0.6
CSDE1-203ENST00000358528 DCAF8L2P0C7V8 631 aa11.19□□□□□ -0.62
CSDE1-203ENST00000358528 PCGF6Q9BYE7 350 aa10.9□□□□□ -0.66
CSDE1-203ENST00000358528 HRCP23327 699 aa10.74□□□□□ -0.69
CSDE1-203ENST00000358528 PPARGC1BQ86YN6 1023 aaKnown RBP10.72□□□□□ -0.69
CSDE1-203ENST00000358528 CHIC1Q5VXU3 224 aa10.71□□□□□ -0.69
CSDE1-203ENST00000358528 EHMT2Q96KQ7 1210 aa10.71□□□□□ -0.69
CSDE1-203ENST00000358528 LOC105371045A0A1W2PR82 267 aa10.63□□□□□ -0.71
CSDE1-203ENST00000358528 FAM9AQ8IZU1 332 aaPredicted RBP10.57□□□□□ -0.72
CSDE1-203ENST00000358528 MYO15BQ96JP2 1530 aa10.53□□□□□ -0.72
CSDE1-203ENST00000358528 TRIM26Q12899 539 aaPredicted RBP10.41□□□□□ -0.74
CSDE1-203ENST00000358528 TRIM41Q8WV44 630 aa10.38□□□□□ -0.75
CSDE1-203ENST00000358528 ZCCHC6Q5VYS8 1495 aaKnown RBP10.37□□□□□ -0.75
CSDE1-203ENST00000358528 TTBK1Q5TCY1 1321 aaPredicted RBP10.37□□□□□ -0.75
CSDE1-203ENST00000358528 AEBP2Q6ZN18 517 aaPredicted RBP10.3□□□□□ -0.76
CSDE1-203ENST00000358528 CCDC180Q9P1Z9 1646 aa10.3□□□□□ -0.76
CSDE1-203ENST00000358528 ZEB1P37275 1124 aaPredicted RBP10.27□□□□□ -0.77
CSDE1-203ENST00000358528 CCER1Q8TC90 406 aaPredicted RBP10.22□□□□□ -0.77
CSDE1-203ENST00000358528 DCAF1Q9Y4B6 1507 aa10.19□□□□□ -0.78
CSDE1-203ENST00000358528 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.17□□□□□ -0.78
CSDE1-203ENST00000358528 PELP1Q8IZL8 1130 aaKnown RBP10.1□□□□□ -0.79
CSDE1-203ENST00000358528 YTHDC1Q96MU7 727 aaKnown RBP10.07□□□□□ -0.8
CSDE1-203ENST00000358528 SCAF1Q9H7N4 1312 aaKnown RBP10.07□□□□□ -0.8
CSDE1-203ENST00000358528 RANGAP1P46060 587 aaPredicted RBP10.03□□□□□ -0.8
CSDE1-203ENST00000358528 CENPBP07199 599 aaPredicted RBP10.03□□□□□ -0.8
CSDE1-203ENST00000358528 UBTFP17480 764 aaKnown RBP10.01□□□□□ -0.81
CSDE1-203ENST00000358528 DIEXFQ68CQ4 756 aaKnown RBP9.99□□□□□ -0.81
CSDE1-203ENST00000358528 SCRIBQ14160 1630 aa9.98□□□□□ -0.81
CSDE1-203ENST00000358528 GTF3C3Q9Y5Q9 886 aa9.97□□□□□ -0.81
CSDE1-203ENST00000358528 NEUROD1Q13562 356 aa9.94□□□□□ -0.82
CSDE1-203ENST00000358528 RSF1Q96T23 1441 aaPredicted RBP9.94□□□□□ -0.82
CSDE1-203ENST00000358528 ACIN1Q9UKV3 1341 aaKnown RBP9.93□□□□□ -0.82
CSDE1-203ENST00000358528 HNRNPUL2Q1KMD3 747 aaKnown RBP9.92□□□□□ -0.82
CSDE1-203ENST00000358528 APLP2Q06481 763 aa9.89□□□□□ -0.83
CSDE1-203ENST00000358528 ABCC9O60706 1549 aa9.88□□□□□ -0.83
CSDE1-203ENST00000358528 RB1CC1Q8TDY2 1594 aa9.84□□□□□ -0.83
CSDE1-203ENST00000358528 ZNF316A6NFI3 1004 aaPredicted RBP9.77□□□□□ -0.84
CSDE1-203ENST00000358528 CECR2Q9BXF3 1484 aa9.77□□□□□ -0.84
CSDE1-203ENST00000358528 ITGAEP38570 1179 aa9.72□□□□□ -0.85
CSDE1-203ENST00000358528 CSRNP3Q8WYN3 585 aa9.72□□□□□ -0.85
CSDE1-203ENST00000358528 PABPN1Q86U42 306 aaKnown RBP eCLIP9.7□□□□□ -0.86
CSDE1-203ENST00000358528 MIER1Q8N108 512 aa9.7□□□□□ -0.86
CSDE1-203ENST00000358528 MROH2BQ7Z745 1585 aa9.68□□□□□ -0.86
CSDE1-203ENST00000358528 CEP162Q5TB80 1403 aa9.66□□□□□ -0.86
CSDE1-203ENST00000358528 MYT1Q01538 1121 aa9.63□□□□□ -0.87
CSDE1-203ENST00000358528 WIZO95785 1651 aa9.62□□□□□ -0.87
CSDE1-203ENST00000358528 ABCC8Q09428 1581 aa9.62□□□□□ -0.87
CSDE1-203ENST00000358528 ATP1B4Q9UN42 357 aaPredicted RBP9.62□□□□□ -0.87
CSDE1-203ENST00000358528 SOGA1O94964 1423 aa9.62□□□□□ -0.87
CSDE1-203ENST00000358528 CCDC88BA6NC98 1476 aa9.6□□□□□ -0.87
CSDE1-203ENST00000358528 BCANQ96GW7 911 aa9.59□□□□□ -0.87
CSDE1-203ENST00000358528 TNIKQ9UKE5 1360 aa9.54□□□□□ -0.88
CSDE1-203ENST00000358528 RUSC2Q8N2Y8 1516 aa9.53□□□□□ -0.88
CSDE1-203ENST00000358528 CLIP1P30622 1438 aa9.5□□□□□ -0.89
CSDE1-203ENST00000358528 NACADO15069 1562 aa9.49□□□□□ -0.89
CSDE1-203ENST00000358528 GOLGA3Q08378 1498 aa9.48□□□□□ -0.89
CSDE1-203ENST00000358528 NEFLP07196 543 aa9.47□□□□□ -0.89
CSDE1-203ENST00000358528 BAZ1AQ9NRL2 1556 aaPredicted RBP9.47□□□□□ -0.89
CSDE1-203ENST00000358528 FAM50AQ14320 339 aaKnown RBP9.45□□□□□ -0.9
CSDE1-203ENST00000358528 WRNQ14191 1432 aaPredicted RBP eCLIP9.45□□□□□ -0.92e-7■□□□□ 9.9
CSDE1-203ENST00000358528 HIRIP3Q9BW71 556 aaPredicted RBP9.43□□□□□ -0.9
CSDE1-203ENST00000358528 EEA1Q15075 1411 aa9.42□□□□□ -0.9
CSDE1-203ENST00000358528 DDX10Q13206 875 aaKnown RBP9.42□□□□□ -0.9
CSDE1-203ENST00000358528 P3H3Q8IVL6 736 aa9.41□□□□□ -0.9
CSDE1-203ENST00000358528 SUPT16HQ9Y5B9 1047 aaKnown RBP9.41□□□□□ -0.9
CSDE1-203ENST00000358528 FKBP8Q14318 412 aa9.41□□□□□ -0.9
CSDE1-203ENST00000358528 CEP164Q9UPV0 1460 aa9.38□□□□□ -0.91
CSDE1-203ENST00000358528 CNGB1Q14028 1251 aaPredicted RBP9.38□□□□□ -0.91
CSDE1-203ENST00000358528 KANK4Q5T7N3 995 aaPredicted RBP9.38□□□□□ -0.91
CSDE1-203ENST00000358528 ERICH6Q7L0X2 663 aa9.37□□□□□ -0.91
CSDE1-203ENST00000358528 TRIM52Q96A61 297 aa9.37□□□□□ -0.91
CSDE1-203ENST00000358528 TOP2AP11388 1531 aaKnown RBP9.37□□□□□ -0.91
CSDE1-203ENST00000358528 KCNH8Q96L42 1107 aa9.36□□□□□ -0.91
CSDE1-203ENST00000358528 VPS8Q8N3P4 1428 aa9.35□□□□□ -0.91
CSDE1-203ENST00000358528 SMARCA2P51531 1590 aa9.33□□□□□ -0.92
CSDE1-203ENST00000358528 RAPGEF2Q9Y4G8 1499 aa9.32□□□□□ -0.92
CSDE1-203ENST00000358528 SIN3AQ96ST3 1273 aa9.32□□□□□ -0.92
CSDE1-203ENST00000358528 SMARCA4P51532 1647 aa9.31□□□□□ -0.92
CSDE1-203ENST00000358528 ANP32CO43423 234 aa9.31□□□□□ -0.92
CSDE1-203ENST00000358528 IRX6P78412 446 aaPredicted RBP9.29□□□□□ -0.92
CSDE1-203ENST00000358528 TSHZ2Q9NRE2 1034 aa9.29□□□□□ -0.92
CSDE1-203ENST00000358528 DHX57Q6P158 1386 aaKnown RBP9.28□□□□□ -0.92
CSDE1-203ENST00000358528 POLR3GLQ9BT43 218 aa9.27□□□□□ -0.92
CSDE1-203ENST00000358528 CLSPNQ9HAW4 1339 aa9.27□□□□□ -0.92
CSDE1-203ENST00000358528 BAZ1BQ9UIG0 1483 aaKnown RBP9.25□□□□□ -0.93
CSDE1-203ENST00000358528 ANP32EQ9BTT0 268 aa9.25□□□□□ -0.93
CSDE1-203ENST00000358528 CCNB3Q8WWL7 1395 aa9.23□□□□□ -0.93
CSDE1-203ENST00000358528 HNRNPUQ00839 825 aaKnown RBP eCLIP9.23□□□□□ -0.93
CSDE1-203ENST00000358528 ARID3CA6NKF2 412 aa9.21□□□□□ -0.93
CSDE1-203ENST00000358528 SYNJ1O43426 1573 aa9.21□□□□□ -0.93
CSDE1-203ENST00000358528 EIF4G1Q04637 1599 aaKnown RBP9.2□□□□□ -0.94
CSDE1-203ENST00000358528 RAB3GAP2Q9H2M9 1393 aa9.2□□□□□ -0.94
CSDE1-203ENST00000358528 KIF21BO75037 1637 aa9.19□□□□□ -0.94
CSDE1-203ENST00000358528 TONSLQ96HA7 1378 aa9.19□□□□□ -0.94
CSDE1-203ENST00000358528 CDK11AQ9UQ88 783 aaPredicted RBP9.18□□□□□ -0.94
CSDE1-203ENST00000358528 SENP3-EIF4A1A0A087X0R7 540 aa9.18□□□□□ -0.94
CSDE1-203ENST00000358528 CHIC2Q9UKJ5 165 aa9.17□□□□□ -0.94
CSDE1-203ENST00000358528 KIF27Q86VH2 1401 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms