RNA–Protein interactions for RNA: YFL001W

DEG1, Transcript of tRNA:pseudouridine synthase, yeast

Gene DEG1, Length 1,329 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEG1	YFL001W	CTF3	Q12748	733 aa		4.82	□□□□□ -1.64
DEG1	YFL001W	RPA190	P10964	1664 aa	Known RBP	4.81	□□□□□ -1.64
DEG1	YFL001W	PUT2	P07275	575 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	PRP2	P20095	876 aa	Predicted RBP	4.81	□□□□□ -1.64
DEG1	YFL001W	PPH22	P23595	377 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	YCR006C	P25350	157 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	RPN2	P32565	945 aa	Known RBP	4.81	□□□□□ -1.64
DEG1	YFL001W	NIP100	P33420	868 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	LTV1	P34078	463 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	SLM4	P38247	162 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	APD1	P38281	316 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	EFM4	P40516	257 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	AIM22	P47051	409 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	LYS20	P48570	428 aa	Known RBP	4.81	□□□□□ -1.64
DEG1	YFL001W	EAF7	P53911	425 aa	Known RBP	4.81	□□□□□ -1.64
DEG1	YFL001W	ASI1	P54074	624 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	RSM23	Q01163	450 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	ADE13	Q05911	482 aa	Known RBP	4.81	□□□□□ -1.64
DEG1	YFL001W	PDR8	Q06149	701 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	PIG1	Q06216	648 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	BSP1	Q06604	576 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	MCH4	Q08268	501 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	RPN5	Q12250	445 aa	Known RBP	4.81	□□□□□ -1.64
DEG1	YFL001W	HIF1	Q12373	385 aa		4.81	□□□□□ -1.64
DEG1	YFL001W	SNQ2	P32568	1501 aa	Known RBP	4.81	□□□□□ -1.64
DEG1	YFL001W	CBP1	P07252	654 aa		4.8	□□□□□ -1.64
DEG1	YFL001W	GAC1	P28006	793 aa		4.8	□□□□□ -1.64
DEG1	YFL001W	HEL1	P36113	551 aa		4.8	□□□□□ -1.64
DEG1	YFL001W	ARN1	P38731	627 aa		4.8	□□□□□ -1.64
DEG1	YFL001W	YHR054C	P38780	354 aa		4.8	□□□□□ -1.64
DEG1	YFL001W	FMS1	P50264	508 aa		4.8	□□□□□ -1.64
DEG1	YFL001W	APM1	Q00776	475 aa	Predicted RBP	4.8	□□□□□ -1.64
DEG1	YFL001W	SKO1	Q02100	647 aa		4.8	□□□□□ -1.64
DEG1	YFL001W	HOT1	Q03213	719 aa		4.8	□□□□□ -1.64
DEG1	YFL001W	RRP45	Q05636	305 aa	Known RBP	4.8	□□□□□ -1.64
DEG1	YFL001W	MMR1	Q06324	491 aa		4.8	□□□□□ -1.64
DEG1	YFL001W	IRC10	Q08118	586 aa		4.8	□□□□□ -1.64
DEG1	YFL001W	CUE5	Q08412	411 aa	Known RBP	4.8	□□□□□ -1.64
DEG1	YFL001W	SLK19	Q08581	821 aa	Known RBP	4.8	□□□□□ -1.64
DEG1	YFL001W	NCE102	Q12207	173 aa	RIP-Chip data	4.8	□□□□□ -1.64	not detected
DEG1	YFL001W	FRE6	Q12473	712 aa		4.8	□□□□□ -1.64
DEG1	YFL001W	NUP159	P40477	1460 aa		4.8	□□□□□ -1.64
DEG1	YFL001W	HIP1	P06775	603 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	PEP4	P07267	405 aa	Known RBP	4.79	□□□□□ -1.64
DEG1	YFL001W	NUP1	P20676	1076 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	SPB1	P25582	841 aa	Predicted RBP	4.79	□□□□□ -1.64
DEG1	YFL001W	YIM1	P28625	365 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	SWH1	P35845	1188 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	NTC20	P38302	140 aa	Predicted RBP	4.79	□□□□□ -1.64
DEG1	YFL001W	ALK1	P43633	760 aa	Known RBP	4.79	□□□□□ -1.64
DEG1	YFL001W	ATG27	P46989	271 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	URB2	P47108	1174 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	COS5	P47187	383 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	PYK2	P52489	506 aa	Known RBP	4.79	□□□□□ -1.64
DEG1	YFL001W	YGL138C	P53122	345 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	YGR126W	P53274	230 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	EOS1	P53938	366 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	SLG1	P54867	378 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	YPL107W	Q02873	248 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	PRP42	Q03776	544 aa	Known RBP	4.79	□□□□□ -1.64
DEG1	YFL001W	ATG26	Q06321	1198 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	COS7	Q07788	383 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	SIL1	Q08199	421 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	UAF30	Q08747	228 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	NFI1	Q12216	726 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	SUT2	Q12286	268 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	YLR111W	Q12528	110 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	LTE1	P07866	1435 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	SNT2	P53127	1403 aa		4.79	□□□□□ -1.64
DEG1	YFL001W	SPS4	P09937	338 aa		4.78	□□□□□ -1.64
DEG1	YFL001W	SUI2	P20459	304 aa	Known RBP	4.78	□□□□□ -1.64
DEG1	YFL001W	SPO11	P23179	398 aa		4.78	□□□□□ -1.64
DEG1	YFL001W	RAD14	P28519	371 aa		4.78	□□□□□ -1.64
DEG1	YFL001W	UBA4	P38820	440 aa		4.78	□□□□□ -1.64
DEG1	YFL001W	ULP2	P40537	1034 aa	Predicted RBP	4.78	□□□□□ -1.64
DEG1	YFL001W	YGR149W	P48236	432 aa		4.78	□□□□□ -1.64
DEG1	YFL001W	YGL108C	P53139	140 aa		4.78	□□□□□ -1.64
DEG1	YFL001W	YNL144C	P53907	740 aa		4.78	□□□□□ -1.64
DEG1	YFL001W	SNU56	Q03782	492 aa	Known RBP	4.78	□□□□□ -1.64
DEG1	YFL001W	HEL2	Q05580	639 aa	Known RBP	4.78	□□□□□ -1.64
DEG1	YFL001W	DCI1	Q08558	271 aa		4.78	□□□□□ -1.64
DEG1	YFL001W	COR1	P07256	457 aa		4.77	□□□□□ -1.65
DEG1	YFL001W	RPL1A	P0CX43	217 aa	Known RBP	4.77	□□□□□ -1.65
DEG1	YFL001W	RPL1B	P0CX44	217 aa	Known RBP	4.77	□□□□□ -1.65
DEG1	YFL001W	RIX1	P38883	763 aa	Predicted RBP	4.77	□□□□□ -1.65
DEG1	YFL001W	FMP30	Q02883	468 aa		4.77	□□□□□ -1.65
DEG1	YFL001W	ACL4	Q03771	387 aa		4.77	□□□□□ -1.65
DEG1	YFL001W	SWF1	Q04629	336 aa		4.77	□□□□□ -1.65
DEG1	YFL001W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.77	□□□□□ -1.65	not detected
DEG1	YFL001W	CYB2	P00175	591 aa		4.76	□□□□□ -1.65
DEG1	YFL001W	VMA2	P16140	517 aa	Known RBP	4.76	□□□□□ -1.65
DEG1	YFL001W	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.76	□□□□□ -1.65	not detected
DEG1	YFL001W	SHP1	P34223	423 aa		4.76	□□□□□ -1.65
DEG1	YFL001W	YHR210C	P38893	341 aa		4.76	□□□□□ -1.65
DEG1	YFL001W	VPS41	P38959	992 aa		4.76	□□□□□ -1.65
DEG1	YFL001W	MBB1	P39534	108 aa		4.76	□□□□□ -1.65
DEG1	YFL001W	RPT4	P53549	437 aa	Known RBP	4.76	□□□□□ -1.65
DEG1	YFL001W	HEF3	P53978	1044 aa	Known RBP	4.76	□□□□□ -1.65
DEG1	YFL001W	YML122C	Q03207	126 aa		4.76	□□□□□ -1.65
DEG1	YFL001W	TPO3	Q06451	622 aa		4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 129.5 ms