RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 BMP2KLQ5H9B9 411 aa14.25□□□□□ -0.13
LIG1-217ENST00000599165 ESYT1Q9BSJ8 1104 aa14.25□□□□□ -0.13
LIG1-217ENST00000599165 CNNM2Q9H8M5 875 aa14.25□□□□□ -0.13
LIG1-217ENST00000599165 RBM8AQ9Y5S9 174 aaKnown RBP14.25□□□□□ -0.13
LIG1-217ENST00000599165 SYNRGQ9UMZ2 1314 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 CTAGE5O15320 804 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 AKR1A1P14550 325 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 SYN1P17600 705 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 FXR1P51114 621 aaKnown RBP eCLIP14.24□□□□□ -0.13
LIG1-217ENST00000599165 SNX17Q15036 470 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 CCDC178Q5BJE1 867 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 TMEM63BQ5T3F8 832 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 GPATCH4Q5T3I0 446 aaKnown RBP14.24□□□□□ -0.13
LIG1-217ENST00000599165 CCSAPQ6IQ19 270 aaPredicted RBP14.24□□□□□ -0.13
LIG1-217ENST00000599165 SLC30A10Q6XR72 485 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 MB21D2Q8IYB1 491 aaPredicted RBP14.24□□□□□ -0.13
LIG1-217ENST00000599165 STAG2Q8N3U4 1231 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 KLHDC9Q8NEP7 349 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 MORC4Q8TE76 937 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 GDF15Q99988 308 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 KAT14Q9H8E8 782 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 XPNPEP3Q9NQH7 507 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 ZHX1Q9UKY1 873 aaPredicted RBP14.24□□□□□ -0.13
LIG1-217ENST00000599165 PHF24Q9UPV7 400 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 CNPY2Q9Y2B0 182 aa14.24□□□□□ -0.13
LIG1-217ENST00000599165 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.23□□□□□ -0.13
LIG1-217ENST00000599165 RARBP10826 455 aa14.23□□□□□ -0.13
LIG1-217ENST00000599165 ADCYAP1R1P41586 468 aa14.23□□□□□ -0.13
LIG1-217ENST00000599165 ATN1P54259 1190 aaPredicted RBP14.23□□□□□ -0.13
LIG1-217ENST00000599165 BAATQ14032 418 aaPredicted RBP14.23□□□□□ -0.13
LIG1-217ENST00000599165 CCDC144BQ3MJ40 725 aa14.23□□□□□ -0.13
LIG1-217ENST00000599165 NSMFQ6X4W1 530 aa14.23□□□□□ -0.13
LIG1-217ENST00000599165 CHST3Q7LGC8 479 aa14.23□□□□□ -0.13
LIG1-217ENST00000599165 ADGRF4Q8IZF3 695 aa14.23□□□□□ -0.13
LIG1-217ENST00000599165 ARRDC4Q8NCT1 418 aa14.23□□□□□ -0.13
LIG1-217ENST00000599165 ABHD16BQ9H3Z7 469 aa14.23□□□□□ -0.13
LIG1-217ENST00000599165 GPHNQ9NQX3 736 aaPredicted RBP14.23□□□□□ -0.13
LIG1-217ENST00000599165 CDC37Q16543 378 aaPredicted RBP14.22□□□□□ -0.13
LIG1-217ENST00000599165 ASPRV1Q53RT3 343 aa14.22□□□□□ -0.13
LIG1-217ENST00000599165 IFIT1BQ5T764 474 aaKnown RBP14.22□□□□□ -0.13
LIG1-217ENST00000599165 TAPT1Q6NXT6 567 aa14.22□□□□□ -0.13
LIG1-217ENST00000599165 SLC39A5Q6ZMH5 540 aa14.22□□□□□ -0.13
LIG1-217ENST00000599165 IGDCC4Q8TDY8 1250 aa14.22□□□□□ -0.13
LIG1-217ENST00000599165 TBC1D5Q92609 795 aa14.22□□□□□ -0.13
LIG1-217ENST00000599165 FERMT2Q96AC1 680 aa14.22□□□□□ -0.13
LIG1-217ENST00000599165 UBAC1Q9BSL1 405 aa14.22□□□□□ -0.13
LIG1-217ENST00000599165 UPF3AQ9H1J1 476 aaKnown RBP14.22□□□□□ -0.13
LIG1-217ENST00000599165 JMJD4Q9H9V9 463 aa14.22□□□□□ -0.13
LIG1-217ENST00000599165 PDGFCQ9NRA1 345 aa14.22□□□□□ -0.13
LIG1-217ENST00000599165 MAD2L2Q9UI95 211 aa14.22□□□□□ -0.13
LIG1-217ENST00000599165 FAM184BQ9ULE4 1060 aa14.22□□□□□ -0.13
LIG1-217ENST00000599165 PALM3A6NDB9 673 aaPredicted RBP14.21□□□□□ -0.13
LIG1-217ENST00000599165 KBTBD13C9JR72 458 aa14.21□□□□□ -0.13
LIG1-217ENST00000599165 OPLAHO14841 1288 aa14.21□□□□□ -0.13
LIG1-217ENST00000599165 PPP1R11O60927 126 aaPredicted RBP14.21□□□□□ -0.13
LIG1-217ENST00000599165 DUSP11O75319 330 aaKnown RBP14.21□□□□□ -0.13
LIG1-217ENST00000599165 RTP1P59025 263 aa14.21□□□□□ -0.13
LIG1-217ENST00000599165 NKX3-2P78367 333 aa14.21□□□□□ -0.13
LIG1-217ENST00000599165 TROAPQ12815 778 aa14.21□□□□□ -0.13
LIG1-217ENST00000599165 NECTIN1Q15223 517 aa14.21□□□□□ -0.13
LIG1-217ENST00000599165 QRICH1Q2TAL8 776 aa14.21□□□□□ -0.13
LIG1-217ENST00000599165 NCOA7Q8NI08 942 aa14.21□□□□□ -0.13
LIG1-217ENST00000599165 MTMR8Q96EF0 704 aa14.21□□□□□ -0.13
LIG1-217ENST00000599165 GNEQ9Y223 722 aaKnown RBP14.21□□□□□ -0.13
LIG1-217ENST00000599165 A0A1W2PQ45 241 aaPredicted RBP14.2□□□□□ -0.14
LIG1-217ENST00000599165 A0A1W2PQY0 241 aa14.2□□□□□ -0.14
LIG1-217ENST00000599165 SLC27A2O14975 620 aa14.2□□□□□ -0.14
LIG1-217ENST00000599165 MYCNP04198 464 aaPredicted RBP14.2□□□□□ -0.14
LIG1-217ENST00000599165 PARP1P09874 1014 aaKnown RBP14.2□□□□□ -0.14
LIG1-217ENST00000599165 EDNRBP24530 442 aa14.2□□□□□ -0.14
LIG1-217ENST00000599165 CST5P28325 142 aaPredicted RBP14.2□□□□□ -0.14
LIG1-217ENST00000599165 MAGEA10P43363 369 aaPredicted RBP14.2□□□□□ -0.14
LIG1-217ENST00000599165 ALDH5A1P51649 535 aaPredicted RBP14.2□□□□□ -0.14
LIG1-217ENST00000599165 RPS6P62753 249 aaKnown RBP14.2□□□□□ -0.14
LIG1-217ENST00000599165 GRM4Q14833 912 aa14.2□□□□□ -0.14
LIG1-217ENST00000599165 USH1GQ495M9 461 aa14.2□□□□□ -0.14
LIG1-217ENST00000599165 TRIM60Q495X7 471 aa14.2□□□□□ -0.14
LIG1-217ENST00000599165 C1orf53Q5VUE5 145 aa14.2□□□□□ -0.14
LIG1-217ENST00000599165 FBXO16Q8IX29 292 aaPredicted RBP14.2□□□□□ -0.14
LIG1-217ENST00000599165 COL20A1Q9P218 1284 aa14.2□□□□□ -0.14
LIG1-217ENST00000599165 KIAA1217Q5T5P2 1943 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 ASB14A6NK59 587 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 IFIT3O14879 490 aaKnown RBP14.19□□□□□ -0.14
LIG1-217ENST00000599165 CYTH3O43739 400 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 SMPD1P17405 629 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 CALML3P27482 149 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 BMP8BP34820 402 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 GJA9P57773 515 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 TRDNQ13061 729 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 CREB3L3Q68CJ9 461 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 RNF207Q6ZRF8 634 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 EEPD1Q7L9B9 569 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 RNF180Q86T96 592 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 LY9Q9HBG7 655 aa14.19□□□□□ -0.14
LIG1-217ENST00000599165 PTPDC1A2A3K4 754 aa14.18□□□□□ -0.14
LIG1-217ENST00000599165 KLRF2D3W0D1 207 aa14.18□□□□□ -0.14
LIG1-217ENST00000599165 SOX1O00570 391 aaPredicted RBP14.18□□□□□ -0.14
LIG1-217ENST00000599165 ACLYP53396 1101 aa14.18□□□□□ -0.14
LIG1-217ENST00000599165 KCNA10Q16322 511 aa14.18□□□□□ -0.14
LIG1-217ENST00000599165 SH3RF1Q7Z6J0 888 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms