RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W JEM1P40358 645 aa5.86□□□□□ -1.47
ATG4YNL223W IRR1P40541 1150 aa5.86□□□□□ -1.47
ATG4YNL223W GAT1P43574 510 aa5.86□□□□□ -1.47
ATG4YNL223W RMD8P43620 662 aa5.86□□□□□ -1.47
ATG4YNL223W SHY1P53266 389 aa5.86□□□□□ -1.47
ATG4YNL223W COG2P53271 262 aa5.86□□□□□ -1.47
ATG4YNL223W PRO2P54885 456 aaKnown RBP5.86□□□□□ -1.47
ATG4YNL223W YMR178WQ03219 274 aaKnown RBP5.86□□□□□ -1.47
ATG4YNL223W PPN1Q04119 674 aa5.86□□□□□ -1.47
ATG4YNL223W SSL1Q04673 461 aaPredicted RBP5.86□□□□□ -1.47
ATG4YNL223W CIA1Q05583 330 aa5.86□□□□□ -1.47
ATG4YNL223W CDA1Q06702 301 aa5.86□□□□□ -1.47
ATG4YNL223W BUD7Q08754 746 aa5.86□□□□□ -1.47
ATG4YNL223W GPB1Q08886 897 aa5.86□□□□□ -1.47
ATG4YNL223W TGL5Q12043 749 aa5.86□□□□□ -1.47
ATG4YNL223W CMR1Q12510 522 aaKnown RBP5.86□□□□□ -1.47
ATG4YNL223W HSH49Q99181 213 aaPredicted RBP5.86□□□□□ -1.47
ATG4YNL223W PHO5P00635 467 aa5.85□□□□□ -1.47
ATG4YNL223W GUK1P15454 187 aaKnown RBP5.85□□□□□ -1.47
ATG4YNL223W FPR1P20081 114 aaKnown RBP5.85□□□□□ -1.47
ATG4YNL223W SAN1P22470 610 aa5.85□□□□□ -1.47
ATG4YNL223W MEF1P25039 761 aa5.85□□□□□ -1.47
ATG4YNL223W TIP20P33891 701 aa5.85□□□□□ -1.47
ATG4YNL223W DBP8P38719 431 aa5.85□□□□□ -1.47
ATG4YNL223W NEM1P38757 446 aa5.85□□□□□ -1.47
ATG4YNL223W MEP1P40260 492 aa5.85□□□□□ -1.47
ATG4YNL223W MET18P40469 1032 aa5.85□□□□□ -1.47
ATG4YNL223W IAH1P41734 238 aa5.85□□□□□ -1.47
ATG4YNL223W YRB1P41920 201 aaKnown RBP5.85□□□□□ -1.47
ATG4YNL223W MDJ2P42834 146 aa5.85□□□□□ -1.47
ATG4YNL223W GYP8P43570 497 aa5.85□□□□□ -1.47
ATG4YNL223W SUM1P46676 1062 aa5.85□□□□□ -1.47
ATG4YNL223W NPL3Q01560 414 aaKnown RBP RIP-Chip data5.85□□□□□ -1.47not detected
ATG4YNL223W VTA1Q06263 330 aa5.85□□□□□ -1.47
ATG4YNL223W BCP1Q06338 283 aa5.85□□□□□ -1.47
ATG4YNL223W MCH5Q08777 521 aa5.85□□□□□ -1.47
ATG4YNL223W SMF3Q12078 473 aaPredicted RBP5.85□□□□□ -1.47
ATG4YNL223W YLR049CQ12110 428 aa5.85□□□□□ -1.47
ATG4YNL223W YOR012WQ12351 137 aa5.85□□□□□ -1.47
ATG4YNL223W ATP2P00830 511 aaKnown RBP5.84□□□□□ -1.47
ATG4YNL223W SPT3P06844 337 aa5.84□□□□□ -1.47
ATG4YNL223W MSF1P08425 469 aa5.84□□□□□ -1.47
ATG4YNL223W PDC5P16467 563 aaKnown RBP5.84□□□□□ -1.47
ATG4YNL223W SIN4P32259 974 aa5.84□□□□□ -1.47
ATG4YNL223W RPS1AP33442 255 aaKnown RBP5.84□□□□□ -1.47
ATG4YNL223W YKL097CP34245 136 aa5.84□□□□□ -1.47
ATG4YNL223W HES1P35843 434 aa5.84□□□□□ -1.47
ATG4YNL223W YBL029WP38201 376 aa5.84□□□□□ -1.47
ATG4YNL223W DSF2P38213 736 aa5.84□□□□□ -1.47
ATG4YNL223W HSE1P38753 452 aa5.84□□□□□ -1.47
ATG4YNL223W PCL5P38794 229 aa5.84□□□□□ -1.47
ATG4YNL223W YEN1P40028 759 aa5.84□□□□□ -1.47
ATG4YNL223W MAM33P40513 266 aa5.84□□□□□ -1.47
ATG4YNL223W FKH2P41813 862 aa5.84□□□□□ -1.47
ATG4YNL223W ERP6P53198 216 aa5.84□□□□□ -1.47
ATG4YNL223W NMA2P53204 395 aa5.84□□□□□ -1.47
ATG4YNL223W IMP4P53941 290 aaKnown RBP5.84□□□□□ -1.47
ATG4YNL223W SFB2P53953 876 aa5.84□□□□□ -1.47
ATG4YNL223W ATP25Q03153 612 aa5.84□□□□□ -1.47
ATG4YNL223W HBT1Q07653 1046 aaKnown RBP5.84□□□□□ -1.47
ATG4YNL223W GTT2Q12390 233 aa5.84□□□□□ -1.47
ATG4YNL223W RPL24AP04449 155 aaKnown RBP5.83□□□□□ -1.48
ATG4YNL223W COS2P0CX12 379 aa5.83□□□□□ -1.48
ATG4YNL223W COS3P0CX13 379 aa5.83□□□□□ -1.48
ATG4YNL223W BET2P20133 325 aa5.83□□□□□ -1.48
ATG4YNL223W SGF29P25554 259 aa5.83□□□□□ -1.48
ATG4YNL223W PHO91P27514 894 aa5.83□□□□□ -1.48
ATG4YNL223W ZIP1P31111 875 aa5.83□□□□□ -1.48
ATG4YNL223W CCR4P31384 837 aaKnown RBP5.83□□□□□ -1.48
ATG4YNL223W CSE1P33307 960 aa5.83□□□□□ -1.48
ATG4YNL223W PMT1P33775 817 aa5.83□□□□□ -1.48
ATG4YNL223W FRE2P36033 711 aa5.83□□□□□ -1.48
ATG4YNL223W YHR020WP38708 688 aaKnown RBP5.83□□□□□ -1.48
ATG4YNL223W SSN3P39073 555 aa5.83□□□□□ -1.48
ATG4YNL223W PIK1P39104 1066 aa5.83□□□□□ -1.48
ATG4YNL223W NPT1P39683 429 aaKnown RBP5.83□□□□□ -1.48
ATG4YNL223W OSW5P40219 148 aa5.83□□□□□ -1.48
ATG4YNL223W HPM1P40481 377 aa5.83□□□□□ -1.48
ATG4YNL223W GCD10P41814 478 aa5.83□□□□□ -1.48
ATG4YNL223W COS4P43542 379 aa5.83□□□□□ -1.48
ATG4YNL223W STB2P46679 850 aa5.83□□□□□ -1.48
ATG4YNL223W IMA1P53051 589 aa5.83□□□□□ -1.48
ATG4YNL223W COG7P53195 279 aa5.83□□□□□ -1.48
ATG4YNL223W SWC4P53201 476 aa5.83□□□□□ -1.48
ATG4YNL223W YGR053CP53234 283 aa5.83□□□□□ -1.48
ATG4YNL223W ARC35P53731 342 aaKnown RBP5.83□□□□□ -1.48
ATG4YNL223W DYN3Q04949 312 aa5.83□□□□□ -1.48
ATG4YNL223W RSC3Q06639 885 aa5.83□□□□□ -1.48
ATG4YNL223W YLR413WQ06689 675 aa5.83□□□□□ -1.48
ATG4YNL223W TFB4Q12004 338 aa5.83□□□□□ -1.48
ATG4YNL223W SAS5Q99314 248 aa5.83□□□□□ -1.48
ATG4YNL223W SEM1O94742 89 aa5.83□□□□□ -1.48
ATG4YNL223W ATP6P00854 259 aa5.83□□□□□ -1.48
ATG4YNL223W RPS14AP06367 137 aaKnown RBP5.83□□□□□ -1.48
ATG4YNL223W CDC21P06785 304 aa5.83□□□□□ -1.48
ATG4YNL223W YAR066WP0CX18 203 aa5.83□□□□□ -1.48
ATG4YNL223W YHR214WP0CX19 203 aa5.83□□□□□ -1.48
ATG4YNL223W KEX2P13134 814 aa5.83□□□□□ -1.48
ATG4YNL223W EPT1P22140 391 aa5.83□□□□□ -1.48
ATG4YNL223W PHO87P25360 923 aa5.83□□□□□ -1.48
Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms