RNA–Protein interactions for RNA: YKR056W

TRM2, Transcript of tRNA methyltransferase, yeast

Gene TRM2, Length 1,920 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRM2	YKR056W	COQ9	Q05779	260 aa		2.69	□□□□□ -1.98
TRM2	YKR056W	YSH1	Q06224	779 aa	Predicted RBP	2.69	□□□□□ -1.98
TRM2	YKR056W	VTA1	Q06263	330 aa		2.69	□□□□□ -1.98
TRM2	YKR056W	DCI1	Q08558	271 aa		2.69	□□□□□ -1.98
TRM2	YKR056W	YPL216W	Q08964	1102 aa		2.69	□□□□□ -1.98
TRM2	YKR056W	BMS1	Q08965	1183 aa	Known RBP	2.69	□□□□□ -1.98
TRM2	YKR056W	TAF3	Q12297	353 aa		2.69	□□□□□ -1.98
TRM2	YKR056W	MF(ALPHA)1	P01149	165 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	HIP1	P06775	603 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	SUI2	P20459	304 aa	Known RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	VMA16	P23968	213 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	MSP1	P28737	362 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	CRM1	P30822	1084 aa	Known RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	YME1	P32795	747 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	RIB7	P33312	244 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	SNU114	P36048	1008 aa	Known RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	TUL1	P36096	758 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	ARP1	P38696	384 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	DIA4	P38705	446 aa	Predicted RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	KEL1	P38853	1164 aa	Known RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	VPS41	P38959	992 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	ALG5	P40350	334 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	OPT1	P40897	799 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	MCM6	P53091	1017 aa	Known RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	DCP2	P53550	970 aa	Known RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	ACL4	Q03771	387 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	RAD33	Q04231	177 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	UFO1	Q04511	668 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	PCL8	Q08966	492 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	YDL007C-A	Q2V2Q0	85 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	CHO1	P08456	276 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	YML002W	P0CF17	737 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	ART10	P18634	518 aa	Known RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	PHO84	P25297	587 aa	Known RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	RRP43	P25359	394 aa	Predicted RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	CDC15	P27636	974 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	LAC1	P28496	418 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	YIM1	P28625	365 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	AFG1	P32317	509 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	NUP133	P36161	1157 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	MLH1	P38920	769 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	AFG3	P39925	761 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	ECM10	P39987	644 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	YMR147W	P40218	223 aa	Known RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	YJL107C	P42947	387 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	DPB11	P47027	764 aa	Predicted RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	NET1	P47035	1189 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	EFM3	P47163	339 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	PDR16	P53860	351 aa	Known RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	YMR160W	Q03823	816 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	HRD3	Q05787	833 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	NOP6	Q07623	225 aa	Known RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	RPS10A	Q08745	105 aa	Predicted RBP	2.68	□□□□□ -1.98
TRM2	YKR056W	APL4	Q12028	832 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	UBX3	Q12229	455 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	RRD2	Q12461	358 aa		2.68	□□□□□ -1.98
TRM2	YKR056W	LAM4	P38800	1345 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	MET3	P08536	511 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	ADH7	P25377	361 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	HCS1	P34243	683 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	PIM1	P36775	1133 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	VBA2	P38358	474 aa	Known RBP	2.67	□□□□□ -1.98
TRM2	YKR056W	UIP3	P39547	235 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	FUN12	P39730	1002 aa	Known RBP	2.67	□□□□□ -1.98
TRM2	YKR056W	PHM8	P40025	321 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	CHS6	P40955	746 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	STU2	P46675	888 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	RPS10B	P46784	105 aa	Known RBP	2.67	□□□□□ -1.98
TRM2	YKR056W	MNN10	P50108	393 aa	Known RBP	2.67	□□□□□ -1.98
TRM2	YKR056W	RPT4	P53549	437 aa	Known RBP	2.67	□□□□□ -1.98
TRM2	YKR056W	HST1	P53685	503 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	ABZ2	Q03266	374 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	TRS23	Q03784	219 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	PDS5	Q04264	1277 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	MLH2	Q07980	695 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	SIL1	Q08199	421 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	NCE102	Q12207	173 aa	RIP-Chip data	2.67	□□□□□ -1.98	not detected
TRM2	YKR056W	INP53	Q12271	1107 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	SFG1	Q12507	346 aa		2.67	□□□□□ -1.98
TRM2	YKR056W	PMA1	P05030	918 aa	Known RBP	2.66	□□□□□ -1.98
TRM2	YKR056W	OM45	P16547	393 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	CLC1	P17891	233 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	RNR3	P21672	869 aa	Known RBP	2.66	□□□□□ -1.98
TRM2	YKR056W	ERG4	P25340	473 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	GSH1	P32477	678 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	RPF2	P36160	344 aa	Known RBP	2.66	□□□□□ -1.98
TRM2	YKR056W	APL3	P38065	1025 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	IMD2	P38697	523 aa	Known RBP	2.66	□□□□□ -1.98
TRM2	YKR056W	MSR1	P38714	643 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	TIF4631	P39935	952 aa	Known RBP	2.66	□□□□□ -1.98
TRM2	YKR056W	SAP1	P39955	897 aa	Known RBP	2.66	□□□□□ -1.98
TRM2	YKR056W	CCT7	P42943	550 aa	Known RBP	2.66	□□□□□ -1.98
TRM2	YKR056W	YJL132W	P47014	750 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	COS5	P47187	383 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	SLG1	P54867	378 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	SPH1	Q06160	661 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	PHO92	Q06390	306 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	COS7	Q07788	383 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	FRE3	Q08905	711 aa		2.66	□□□□□ -1.98
TRM2	YKR056W	VPS54	Q12071	889 aa		2.66	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 15 ms