RNA–Protein interactions for RNA: YHR170W

NMD3, Transcript of Protein involved in nuclear export of the large ribosomal subunit, yeast

Gene NMD3, Length 1,557 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NMD3	YHR170W	YAP6	Q03935	383 aa		4.61	□□□□□ -1.67
NMD3	YHR170W	YMR027W	Q04371	470 aa		4.61	□□□□□ -1.67
NMD3	YHR170W	YDR514C	Q04408	483 aa		4.61	□□□□□ -1.67
NMD3	YHR170W	RXT3	Q07458	294 aa		4.61	□□□□□ -1.67
NMD3	YHR170W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
NMD3	YHR170W	UPC2	Q12151	913 aa		4.61	□□□□□ -1.67
NMD3	YHR170W	AVL9	Q12500	764 aa		4.61	□□□□□ -1.67
NMD3	YHR170W	HIS5	P07172	385 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	ATP1	P07251	545 aa	Known RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	ILV2	P07342	687 aa	Known RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	KGD2	P19262	463 aa	Predicted RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	ADY2	P25613	283 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	URA7	P28274	579 aa	Known RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	HEM12	P32347	362 aa	Predicted RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	VPH1	P32563	840 aa	Known RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	STE14	P32584	239 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	TYE7	P33122	291 aa	Predicted RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	PEX5	P35056	612 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	YBR225W	P38321	900 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	FSH1	P38777	243 aa	Known RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	PPE1	P38796	400 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	AIM18	P38884	321 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	YIL108W	P40483	696 aa	Known RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	QRI7	P43122	407 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	AIM14	P53109	570 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	TRM112	P53738	135 aa	Predicted RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	CEG1	Q01159	459 aa	Predicted RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	RNT1	Q02555	471 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	SHR3	Q02774	210 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	SLU7	Q02775	382 aa	Known RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	AIM32	Q04689	311 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	ARP9	Q05123	467 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	ADE13	Q05911	482 aa	Known RBP	4.6	□□□□□ -1.67
NMD3	YHR170W	LCB4	Q12246	624 aa		4.6	□□□□□ -1.67
NMD3	YHR170W	QCR6	P00127	147 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	RER1	P25560	188 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	GID7	P25569	745 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	KAR4	P25583	335 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	URK1	P27515	501 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	VMA8	P32610	256 aa	Known RBP	4.59	□□□□□ -1.67
NMD3	YHR170W	TOD6	P34219	525 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	PXA2	P34230	853 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	CAB3	P36076	571 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	PRM9	P39551	298 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	YEL028W	P39989	153 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	EDC3	P39998	551 aa	Known RBP	4.59	□□□□□ -1.67
NMD3	YHR170W	RPS10B	P46784	105 aa	Known RBP	4.59	□□□□□ -1.67
NMD3	YHR170W	SNG1	P46950	547 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	MNN11	P46985	422 aa	Known RBP	4.59	□□□□□ -1.67
NMD3	YHR170W	TRF5	P48561	642 aa	Known RBP	4.59	□□□□□ -1.67
NMD3	YHR170W	SLD3	P53135	668 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	TIM13	P53299	105 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	VPS9	P54787	451 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	PIR3	Q03180	325 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	APC5	Q08683	685 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	RPS10A	Q08745	105 aa	Predicted RBP	4.59	□□□□□ -1.67
NMD3	YHR170W	CIR2	Q08822	631 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	HAL9	Q12180	1030 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	GPM3	Q12326	303 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	EFG1	Q3E705	233 aa	Known RBP	4.59	□□□□□ -1.67
NMD3	YHR170W	YBR182C-A	Q8TGU6	64 aa		4.59	□□□□□ -1.67
NMD3	YHR170W	IMA3	P0CW40	589 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	IMA4	P0CW41	589 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	SRV2	P17555	526 aa	Known RBP	4.58	□□□□□ -1.68
NMD3	YHR170W	YCR051W	P25631	222 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	RAD5	P32849	1169 aa	Predicted RBP	4.58	□□□□□ -1.68
NMD3	YHR170W	KES1	P35844	434 aa	Known RBP	4.58	□□□□□ -1.68
NMD3	YHR170W	YKR051W	P36142	418 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	APE4	P38821	490 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	YAT2	P40017	923 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	CAF16	P43569	289 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	HOL1	P53389	586 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	KTR5	P53966	522 aa	Predicted RBP	4.58	□□□□□ -1.68
NMD3	YHR170W	RCF1	Q03713	159 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	BUD22	Q04347	519 aa	Known RBP	4.58	□□□□□ -1.68
NMD3	YHR170W	YLR224W	Q05947	369 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	YET3	Q07451	203 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	IMA2	Q08295	589 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	YOR387C	Q08910	206 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	NDJ1	Q12366	352 aa		4.58	□□□□□ -1.68
NMD3	YHR170W	RPS9A	O13516	197 aa	Known RBP	4.57	□□□□□ -1.68
NMD3	YHR170W	HIS1	P00498	297 aa	Known RBP	4.57	□□□□□ -1.68
NMD3	YHR170W	ILS1	P09436	1072 aa	Known RBP	4.57	□□□□□ -1.68
NMD3	YHR170W	YMR085W	P0CF18	432 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	SSC1	P0CS90	654 aa	Known RBP	4.57	□□□□□ -1.68
NMD3	YHR170W	APE1	P14904	514 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	SAN1	P22470	610 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	MRPL25	P23369	157 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	PMI40	P29952	429 aa	Known RBP	4.57	□□□□□ -1.68
NMD3	YHR170W	RAD16	P31244	790 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	LST4	P34239	828 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	ETR1	P38071	380 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	YBR062C	P38239	180 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	UBS1	P38290	277 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	SPC97	P38863	823 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	PLB1	P39105	664 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	DSN1	P40568	576 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	TRS85	P46944	698 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	SAE2	P46946	345 aa		4.57	□□□□□ -1.68
NMD3	YHR170W	VPS25	P47142	202 aa		4.57	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 12.2 ms