RNA–Protein interactions for RNA: YER029C

SMB1, Transcript of Core Sm protein Sm B, yeast

Gene SMB1, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMB1	YER029C	FUM1	P08417	488 aa	Known RBP	2.61	□□□□□ -1.99
SMB1	YER029C	PDA1	P16387	420 aa	Known RBP	2.61	□□□□□ -1.99
SMB1	YER029C	TYR1	P20049	452 aa		2.61	□□□□□ -1.99
SMB1	YER029C	MCM4	P30665	933 aa	Known RBP	2.61	□□□□□ -1.99
SMB1	YER029C	TRS65	P32893	560 aa		2.61	□□□□□ -1.99
SMB1	YER029C	NUP133	P36161	1157 aa		2.61	□□□□□ -1.99
SMB1	YER029C	BUR6	P40096	142 aa		2.61	□□□□□ -1.99
SMB1	YER029C	APT1	P49435	187 aa	Known RBP	2.61	□□□□□ -1.99
SMB1	YER029C	DIA3	P52290	468 aa		2.61	□□□□□ -1.99
SMB1	YER029C	RTS3	P53289	263 aa		2.61	□□□□□ -1.99
SMB1	YER029C	MEP3	P53390	489 aa		2.61	□□□□□ -1.99
SMB1	YER029C	CBK1	P53894	756 aa		2.61	□□□□□ -1.99
SMB1	YER029C	CRZ1	P53968	678 aa		2.61	□□□□□ -1.99
SMB1	YER029C	YSA1	Q01976	231 aa		2.61	□□□□□ -1.99
SMB1	YER029C	RPM2	Q02773	1202 aa		2.61	□□□□□ -1.99
SMB1	YER029C	EMI2	Q04409	500 aa	Known RBP	2.61	□□□□□ -1.99
SMB1	YER029C	VIP1	Q06685	1146 aa	Known RBP	2.61	□□□□□ -1.99
SMB1	YER029C	FMP45	Q07651	309 aa		2.61	□□□□□ -1.99
SMB1	YER029C	THI20	Q08224	551 aa		2.61	□□□□□ -1.99
SMB1	YER029C	RDR1	Q08904	546 aa		2.61	□□□□□ -1.99
SMB1	YER029C	NBP2	Q12163	236 aa		2.61	□□□□□ -1.99
SMB1	YER029C	ARP6	Q12509	438 aa		2.61	□□□□□ -1.99
SMB1	YER029C	ARG81	P05085	880 aa		2.6	□□□□□ -1.99
SMB1	YER029C	PRP16	P15938	1071 aa	Predicted RBP	2.6	□□□□□ -1.99
SMB1	YER029C	TRX2	P22803	104 aa	Known RBP	2.6	□□□□□ -1.99
SMB1	YER029C	BUD5	P25300	642 aa	Predicted RBP	2.6	□□□□□ -1.99
SMB1	YER029C	SNC1	P31109	117 aa		2.6	□□□□□ -1.99
SMB1	YER029C	MIC60	P36112	540 aa		2.6	□□□□□ -1.99
SMB1	YER029C	DBP8	P38719	431 aa		2.6	□□□□□ -1.99
SMB1	YER029C	KRE9	P39005	276 aa		2.6	□□□□□ -1.99
SMB1	YER029C	DIM1	P41819	318 aa	Known RBP	2.6	□□□□□ -1.99
SMB1	YER029C	ERG26	P53199	349 aa	Known RBP	2.6	□□□□□ -1.99
SMB1	YER029C	DRN1	P53255	507 aa	Known RBP	2.6	□□□□□ -1.99
SMB1	YER029C	TDA7	P53882	636 aa	Predicted RBP	2.6	□□□□□ -1.99
SMB1	YER029C	IMP4	P53941	290 aa	Known RBP	2.6	□□□□□ -1.99
SMB1	YER029C	EFM6	P53970	246 aa		2.6	□□□□□ -1.99
SMB1	YER029C	RAD30	Q04049	632 aa		2.6	□□□□□ -1.99
SMB1	YER029C	TEN1	Q07921	160 aa		2.6	□□□□□ -1.99
SMB1	YER029C	ETT1	Q08421	412 aa	Known RBP	2.6	□□□□□ -1.99
SMB1	YER029C	LEU9	Q12166	604 aa	Known RBP	2.6	□□□□□ -1.99
SMB1	YER029C	SPE4	Q12455	300 aa		2.6	□□□□□ -1.99
SMB1	YER029C	ARD1	P07347	238 aa	Predicted RBP	2.59	□□□□□ -1.99
SMB1	YER029C	KGD1	P20967	1014 aa	Known RBP	2.59	□□□□□ -1.99
SMB1	YER029C	VMA16	P23968	213 aa		2.59	□□□□□ -1.99
SMB1	YER029C	ADH7	P25377	361 aa		2.59	□□□□□ -1.99
SMB1	YER029C	PUP3	P25451	205 aa	Known RBP	2.59	□□□□□ -1.99
SMB1	YER029C	ECM15	P35195	104 aa		2.59	□□□□□ -1.99
SMB1	YER029C	LAG1	P38703	411 aa		2.59	□□□□□ -1.99
SMB1	YER029C	AXL1	P40851	1208 aa		2.59	□□□□□ -1.99
SMB1	YER029C	BSC5	P53755	489 aa		2.59	□□□□□ -1.99
SMB1	YER029C	RHO4	Q00246	291 aa		2.59	□□□□□ -1.99
SMB1	YER029C	RSM23	Q01163	450 aa		2.59	□□□□□ -1.99
SMB1	YER029C	ECM30	Q06673	1274 aa		2.59	□□□□□ -1.99
SMB1	YER029C	TIP41	Q12199	356 aa		2.59	□□□□□ -1.99
SMB1	YER029C	NCE102	Q12207	173 aa	RIP-Chip data	2.59	□□□□□ -1.99	not detected
SMB1	YER029C	RPL15A	P05748	204 aa	Known RBP	2.58	□□□□□ -2
SMB1	YER029C	CDC24	P11433	854 aa	Predicted RBP	2.58	□□□□□ -2
SMB1	YER029C	SPE2	P21182	396 aa		2.58	□□□□□ -2
SMB1	YER029C	ATS1	P31386	333 aa		2.58	□□□□□ -2
SMB1	YER029C	YBL055C	P34220	418 aa	Predicted RBP	2.58	□□□□□ -2
SMB1	YER029C	AGP2	P38090	596 aa		2.58	□□□□□ -2
SMB1	YER029C	MAL33	P38157	468 aa		2.58	□□□□□ -2
SMB1	YER029C	CCT6	P39079	546 aa		2.58	□□□□□ -2
SMB1	YER029C	YTA12	P40341	825 aa		2.58	□□□□□ -2
SMB1	YER029C	YDL186W	P48568	277 aa		2.58	□□□□□ -2
SMB1	YER029C	YPL014W	Q02606	381 aa		2.58	□□□□□ -2
SMB1	YER029C	DPB4	Q04603	196 aa	Known RBP	2.58	□□□□□ -2
SMB1	YER029C	SSK1	Q07084	712 aa		2.58	□□□□□ -2
SMB1	YER029C	TLG2	Q08144	397 aa		2.58	□□□□□ -2
SMB1	YER029C	PDH1	Q12428	516 aa	Known RBP	2.58	□□□□□ -2
SMB1	YER029C	RER1	P25560	188 aa		2.57	□□□□□ -2
SMB1	YER029C	CHS3	P29465	1165 aa		2.57	□□□□□ -2
SMB1	YER029C	YKL100C	P34248	587 aa		2.57	□□□□□ -2
SMB1	YER029C	YJL068C	P40363	299 aa		2.57	□□□□□ -2
SMB1	YER029C	IKS1	P47042	667 aa		2.57	□□□□□ -2
SMB1	YER029C	SAM50	P53969	484 aa		2.57	□□□□□ -2
SMB1	YER029C	YMR160W	Q03823	816 aa		2.57	□□□□□ -2
SMB1	YER029C	OPY2	Q06810	360 aa		2.57	□□□□□ -2
SMB1	YER029C	CDC16	P09798	840 aa		2.56	□□□□□ -2
SMB1	YER029C	AMD1	P15274	810 aa	Known RBP	2.56	□□□□□ -2
SMB1	YER029C	CMK1	P27466	446 aa	Known RBP	2.56	□□□□□ -2
SMB1	YER029C	ROT2	P38138	954 aa		2.56	□□□□□ -2
SMB1	YER029C	YHR218W	P38899	603 aa		2.56	□□□□□ -2
SMB1	YER029C	VPS52	P39904	641 aa		2.56	□□□□□ -2
SMB1	YER029C	COS10	P52924	374 aa		2.56	□□□□□ -2
SMB1	YER029C	SMM1	P53720	384 aa	Known RBP	2.56	□□□□□ -2
SMB1	YER029C	NGL3	Q03210	505 aa		2.56	□□□□□ -2
SMB1	YER029C	ERP1	Q05359	219 aa	Known RBP	2.56	□□□□□ -2
SMB1	YER029C	YEH2	Q07950	538 aa		2.56	□□□□□ -2
SMB1	YER029C	CDC45	Q08032	650 aa		2.56	□□□□□ -2
SMB1	YER029C	YOR365C	Q08844	703 aa		2.56	□□□□□ -2
SMB1	YER029C	TCO89	Q08921	799 aa		2.56	□□□□□ -2
SMB1	YER029C	PPT2	Q12036	173 aa		2.56	□□□□□ -2
SMB1	YER029C	SKM1	Q12469	655 aa		2.56	□□□□□ -2
SMB1	YER029C	MF(ALPHA)1	P01149	165 aa		2.55	□□□□□ -2
SMB1	YER029C	YIH1	P25637	258 aa		2.55	□□□□□ -2
SMB1	YER029C	MCM10	P32354	571 aa		2.55	□□□□□ -2
SMB1	YER029C	SSE2	P32590	693 aa	Known RBP	2.55	□□□□□ -2
SMB1	YER029C	SIP2	P34164	415 aa	Known RBP	2.55	□□□□□ -2
SMB1	YER029C	MUD2	P36084	527 aa	Known RBP	2.55	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms