RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 NECTIN1Q15223 517 aa19.12■□□□□ 0.65
SF3A1-209ENST00000496189 TTBK2Q6IQ55 1244 aa19.12■□□□□ 0.65
SF3A1-209ENST00000496189 RASGRP2Q7LDG7 609 aa19.12■□□□□ 0.65
SF3A1-209ENST00000496189 CATIPQ7Z7H3 387 aa19.12■□□□□ 0.65
SF3A1-209ENST00000496189 TMTC2Q8N394 836 aa19.12■□□□□ 0.65
SF3A1-209ENST00000496189 U2AF1L4Q8WU68 220 aaKnown RBP19.12■□□□□ 0.65
SF3A1-209ENST00000496189 DEFB118Q96PH6 123 aa19.12■□□□□ 0.65
SF3A1-209ENST00000496189 MTA3Q9BTC8 594 aa19.12■□□□□ 0.65
SF3A1-209ENST00000496189 RNF146Q9NTX7 359 aa19.12■□□□□ 0.65
SF3A1-209ENST00000496189 PFASO15067 1338 aa19.11■□□□□ 0.65
SF3A1-209ENST00000496189 PRC1O43663 620 aa19.11■□□□□ 0.65
SF3A1-209ENST00000496189 SGPL1O95470 568 aa19.11■□□□□ 0.65
SF3A1-209ENST00000496189 ICAM1P05362 532 aa19.11■□□□□ 0.65
SF3A1-209ENST00000496189 GOLGA8HP0CJ92 632 aa19.11■□□□□ 0.65
SF3A1-209ENST00000496189 CACNB2Q08289 660 aaPredicted RBP19.11■□□□□ 0.65
SF3A1-209ENST00000496189 SEC23AQ15436 765 aa19.11■□□□□ 0.65
SF3A1-209ENST00000496189 NFXL1Q6ZNB6 911 aa19.11■□□□□ 0.65
SF3A1-209ENST00000496189 NPLOC4Q8TAT6 608 aa19.11■□□□□ 0.65
SF3A1-209ENST00000496189 AGBL1Q96MI9 1066 aa19.11■□□□□ 0.65
SF3A1-209ENST00000496189 TRERF1Q96PN7 1200 aa19.11■□□□□ 0.65
SF3A1-209ENST00000496189 RANBP17Q9H2T7 1088 aaKnown RBP19.11■□□□□ 0.65
SF3A1-209ENST00000496189 PAK6Q9NQU5 681 aaPredicted RBP19.11■□□□□ 0.65
SF3A1-209ENST00000496189 DIS3Q9Y2L1 958 aaKnown RBP19.11■□□□□ 0.65
SF3A1-209ENST00000496189 RIPK3Q9Y572 518 aa19.11■□□□□ 0.65
SF3A1-209ENST00000496189 MSCO60682 206 aa19.1■□□□□ 0.65
SF3A1-209ENST00000496189 COBLO75128 1261 aa19.1■□□□□ 0.65
SF3A1-209ENST00000496189 PGK2P07205 417 aa19.1■□□□□ 0.65
SF3A1-209ENST00000496189 CNGA1P29973 690 aa19.1■□□□□ 0.65
SF3A1-209ENST00000496189 TRIM32Q13049 653 aa19.1■□□□□ 0.65
SF3A1-209ENST00000496189 MAP3K21Q5TCX8 1036 aa19.1■□□□□ 0.65
SF3A1-209ENST00000496189 STOX1Q6ZVD7 989 aa19.1■□□□□ 0.65
SF3A1-209ENST00000496189 CHST3Q7LGC8 479 aa19.1■□□□□ 0.65
SF3A1-209ENST00000496189 MB21D2Q8IYB1 491 aaPredicted RBP19.1■□□□□ 0.65
SF3A1-209ENST00000496189 MAML3Q96JK9 1138 aa19.1■□□□□ 0.65
SF3A1-209ENST00000496189 TMEM87BQ96K49 555 aa19.1■□□□□ 0.65
SF3A1-209ENST00000496189 CCDC69A6NI79 296 aa19.09■□□□□ 0.65
SF3A1-209ENST00000496189 SNAP25P60880 206 aa19.09■□□□□ 0.65
SF3A1-209ENST00000496189 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.09■□□□□ 0.65
SF3A1-209ENST00000496189 CNPY2Q9Y2B0 182 aa19.09■□□□□ 0.65
SF3A1-209ENST00000496189 TAF6LQ9Y6J9 622 aa19.09■□□□□ 0.65
SF3A1-209ENST00000496189 CENPFP49454 3210 aa19.09■□□□□ 0.65
SF3A1-209ENST00000496189 ZNF536O15090 1300 aa19.08■□□□□ 0.65
SF3A1-209ENST00000496189 POTEB2H3BUK9 544 aa19.08■□□□□ 0.64
SF3A1-209ENST00000496189 HMGB1P09429 215 aaKnown RBP19.08■□□□□ 0.64
SF3A1-209ENST00000496189 CYP2C19P33261 490 aa19.08■□□□□ 0.64
SF3A1-209ENST00000496189 MSL3Q8N5Y2 521 aaKnown RBP19.08■□□□□ 0.64
SF3A1-209ENST00000496189 NEK1Q96PY6 1258 aa19.08■□□□□ 0.64
SF3A1-209ENST00000496189 UBA5Q9GZZ9 404 aa19.08■□□□□ 0.64
SF3A1-209ENST00000496189 FLRT1Q9NZU1 646 aa19.08■□□□□ 0.64
SF3A1-209ENST00000496189 KIAA0100Q14667 2235 aaKnown RBP19.08■□□□□ 0.64
SF3A1-209ENST00000496189 WDR19Q8NEZ3 1342 aa19.07■□□□□ 0.64
SF3A1-209ENST00000496189 KLRF2D3W0D1 207 aa19.07■□□□□ 0.64
SF3A1-209ENST00000496189 KIF5BP33176 963 aa19.07■□□□□ 0.64
SF3A1-209ENST00000496189 TRAF1Q13077 416 aa19.07■□□□□ 0.64
SF3A1-209ENST00000496189 ZNF792Q3KQV3 632 aa19.07■□□□□ 0.64
SF3A1-209ENST00000496189 NSMFQ6X4W1 530 aa19.07■□□□□ 0.64
SF3A1-209ENST00000496189 SYNE3Q6ZMZ3 975 aa19.07■□□□□ 0.64
SF3A1-209ENST00000496189 CTCFLQ8NI51 663 aaPredicted RBP19.07■□□□□ 0.64
SF3A1-209ENST00000496189 TINF2Q9BSI4 451 aa19.07■□□□□ 0.64
SF3A1-209ENST00000496189 NRBP1Q9UHY1 535 aa19.07■□□□□ 0.64
SF3A1-209ENST00000496189 FARP2O94887 1054 aaPredicted RBP19.06■□□□□ 0.64
SF3A1-209ENST00000496189 CALM1P0DP23 149 aa19.06■□□□□ 0.64
SF3A1-209ENST00000496189 CALM2P0DP24 149 aa19.06■□□□□ 0.64
SF3A1-209ENST00000496189 CALM3P0DP25 149 aa19.06■□□□□ 0.64
SF3A1-209ENST00000496189 ANTXR2P58335 489 aa19.06■□□□□ 0.64
SF3A1-209ENST00000496189 FGD1P98174 961 aa19.06■□□□□ 0.64
SF3A1-209ENST00000496189 CDC37Q16543 378 aaPredicted RBP19.06■□□□□ 0.64
SF3A1-209ENST00000496189 ADGRF4Q8IZF3 695 aa19.06■□□□□ 0.64
SF3A1-209ENST00000496189 ANKLE1Q8NAG6 615 aa19.06■□□□□ 0.64
SF3A1-209ENST00000496189 NUP133Q8WUM0 1156 aa19.06■□□□□ 0.64
SF3A1-209ENST00000496189 ZNFX1Q9P2E3 1918 aaKnown RBP19.06■□□□□ 0.64
SF3A1-209ENST00000496189 DDAH1O94760 285 aa19.05■□□□□ 0.64
SF3A1-209ENST00000496189 CCND3P30281 292 aaPredicted RBP19.05■□□□□ 0.64
SF3A1-209ENST00000496189 GRM4Q14833 912 aa19.05■□□□□ 0.64
SF3A1-209ENST00000496189 TSGA10IPQ3SY00 556 aa19.05■□□□□ 0.64
SF3A1-209ENST00000496189 ZNF467Q7Z7K2 595 aaPredicted RBP19.05■□□□□ 0.64
SF3A1-209ENST00000496189 IGDCC4Q8TDY8 1250 aa19.05■□□□□ 0.64
SF3A1-209ENST00000496189 MPHOSPH6Q99547 160 aaKnown RBP19.05■□□□□ 0.64
SF3A1-209ENST00000496189 LY9Q9HBG7 655 aa19.05■□□□□ 0.64
SF3A1-209ENST00000496189 VAT1LQ9HCJ6 419 aa19.05■□□□□ 0.64
SF3A1-209ENST00000496189 A1CFQ9NQ94 594 aaKnown RBP19.05■□□□□ 0.64
SF3A1-209ENST00000496189 SYNGAP1Q96PV0 1343 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 PTPDC1A2A3K4 754 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 ASB14A6NK59 587 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 SH2B2O14492 632 aaPredicted RBP19.04■□□□□ 0.64
SF3A1-209ENST00000496189 CYBAP13498 195 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 HSPA4P34932 840 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 LIFRP42702 1097 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 USH1GQ495M9 461 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 ZNF654Q8IZM8 581 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 SHISA4Q96DD7 197 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 MAP3K14Q99558 947 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 HTATIP2Q9BUP3 242 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 ADD3Q9UEY8 706 aaKnown RBP19.04■□□□□ 0.64
SF3A1-209ENST00000496189 DDX20Q9UHI6 824 aaKnown RBP19.04■□□□□ 0.64
SF3A1-209ENST00000496189 MAD2L2Q9UI95 211 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 PLXNA1Q9UIW2 1896 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 SLC12A7Q9Y666 1083 aa19.04■□□□□ 0.64
SF3A1-209ENST00000496189 ABCB11O95342 1321 aa19.03■□□□□ 0.64
SF3A1-209ENST00000496189 DNAJC25-GNG10A0A024R161 153 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms