RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROT1	YMR200W	LTV1	P34078	463 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	COY1	P34237	679 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	KES1	P35844	434 aa	Known RBP	4.96	□□□□□ -1.62
ROT1	YMR200W	AUR1	P36107	401 aa	Predicted RBP	4.96	□□□□□ -1.62
ROT1	YMR200W	FLO10	P36170	1169 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	STB5	P38699	743 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	ERC1	P38767	581 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	GET2	P40056	285 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	SLZ1	P40167	298 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	PKP1	P40530	394 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.62	not detected
ROT1	YMR200W	LYS4	P49367	693 aa	Predicted RBP	4.96	□□□□□ -1.62
ROT1	YMR200W	TAM41	P53230	385 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	RPA49	Q01080	415 aa	Predicted RBP	4.96	□□□□□ -1.62
ROT1	YMR200W	YML037C	Q03703	340 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	YDR239C	Q03780	787 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	CTK1	Q03957	528 aa	Known RBP	4.96	□□□□□ -1.62
ROT1	YMR200W	ATG38	Q05789	226 aa	Known RBP	4.96	□□□□□ -1.62
ROT1	YMR200W	MCM21	Q06675	368 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	VPS36	Q06696	566 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	BUD7	Q08754	746 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	YRM1	Q12340	786 aa		4.96	□□□□□ -1.62
ROT1	YMR200W	RPL6B	P05739	176 aa	Known RBP	4.95	□□□□□ -1.62
ROT1	YMR200W	DAP2	P18962	818 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	MRPL25	P23369	157 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	RRT2	P38332	387 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	RIX1	P38883	763 aa	Predicted RBP	4.95	□□□□□ -1.62
ROT1	YMR200W	YJL206C	P39529	758 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	NUP60	P39705	539 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	GID8	P40208	455 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	NDC80	P40460	691 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	CHS6	P40955	746 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	ALK1	P43633	760 aa	Known RBP	4.95	□□□□□ -1.62
ROT1	YMR200W	COX18	P53239	316 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	FHN1	P53279	174 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	LSB1	P53281	241 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	LSC1	P53598	329 aa	Known RBP	4.95	□□□□□ -1.62
ROT1	YMR200W	RPL6A	Q02326	176 aa	Known RBP	4.95	□□□□□ -1.62
ROT1	YMR200W	KAP120	Q02932	1032 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	MUB1	Q03162	620 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	HMO1	Q03973	246 aa	Known RBP	4.95	□□□□□ -1.62
ROT1	YMR200W	STP3	Q05937	343 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	MRD1	Q06106	887 aa	Known RBP	4.95	□□□□□ -1.62
ROT1	YMR200W	YSH1	Q06224	779 aa	Predicted RBP	4.95	□□□□□ -1.62
ROT1	YMR200W	AIM6	Q07716	390 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	TAF3	Q12297	353 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	SPE4	Q12455	300 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	YPT6	Q99260	215 aa		4.95	□□□□□ -1.62
ROT1	YMR200W	TPK2	P06245	380 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	ERG20	P08524	352 aa	Known RBP	4.94	□□□□□ -1.62
ROT1	YMR200W	RNA1	P11745	407 aa	Known RBP	4.94	□□□□□ -1.62
ROT1	YMR200W	SYN8	P31377	255 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	EMP70	P32802	667 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	MRP4	P32902	394 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	PHO11	P35842	467 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	PHO12	P38693	467 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	YNL195C	P40168	261 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	VMA13	P41807	478 aa	Known RBP	4.94	□□□□□ -1.62
ROT1	YMR200W	ABZ2	Q03266	374 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	SOV1	Q04748	898 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	RQC1	Q05468	723 aa	Known RBP	4.94	□□□□□ -1.62
ROT1	YMR200W	KAP95	Q06142	861 aa	Known RBP	4.94	□□□□□ -1.62
ROT1	YMR200W	RRT8	Q08219	342 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	MLH3	Q12083	715 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	SWT1	Q12104	458 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	YOR019W	Q99248	730 aa		4.94	□□□□□ -1.62
ROT1	YMR200W	DMC1	P25453	334 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	YPT7	P32939	208 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	PMT1	P33775	817 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	AFG3	P39925	761 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	MAF1	P41910	395 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	DLD2	P46681	530 aa	Known RBP	4.93	□□□□□ -1.62
ROT1	YMR200W	YDL183C	P48569	320 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	MLC1	P53141	149 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	RHO5	P53879	331 aa	Known RBP	4.93	□□□□□ -1.62
ROT1	YMR200W	AQR1	P53943	586 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	EGD1	Q02642	157 aa	Known RBP	4.93	□□□□□ -1.62
ROT1	YMR200W	PPM1	Q04081	328 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	MRPL1	Q04599	285 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	VPS38	Q05919	439 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	PCL8	Q08966	492 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	UBX3	Q12229	455 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	NDJ1	Q12366	352 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	YIL002W-A	Q3E7Z5	69 aa		4.93	□□□□□ -1.62
ROT1	YMR200W	PNO1	Q99216	274 aa	Known RBP	4.93	□□□□□ -1.62
ROT1	YMR200W	GAL80	P04387	435 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	RPS9B	P05755	195 aa	Known RBP	4.92	□□□□□ -1.62
ROT1	YMR200W	SEC12	P11655	471 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	RPL3	P14126	387 aa	Known RBP	4.92	□□□□□ -1.62
ROT1	YMR200W	ARO3	P14843	370 aa	Known RBP	4.92	□□□□□ -1.62
ROT1	YMR200W	RNR1	P21524	888 aa	Known RBP	4.92	□□□□□ -1.62
ROT1	YMR200W	BUD5	P25300	642 aa	Predicted RBP	4.92	□□□□□ -1.62
ROT1	YMR200W	ADY2	P25613	283 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	PRP45	P28004	379 aa	Predicted RBP	4.92	□□□□□ -1.62
ROT1	YMR200W	PRE2	P30656	287 aa	Known RBP	4.92	□□□□□ -1.62
ROT1	YMR200W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.92	□□□□□ -1.62	not detected
ROT1	YMR200W	CMC1	P36064	111 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	APT2	P36973	181 aa		4.92	□□□□□ -1.62
ROT1	YMR200W	GDT1	P38301	280 aa	Predicted RBP	4.92	□□□□□ -1.62
ROT1	YMR200W	DED81	P38707	554 aa	Known RBP	4.92	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 17.8 ms