RNA–Protein interactions for RNA: YHR027C

RPN1, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeast

Gene RPN1, Length 2,982 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN1	YHR027C	YPR063C	Q12160	140 aa		3.14	□□□□□ -1.91
RPN1	YHR027C	TY3A-G	Q12173	290 aa		3.14	□□□□□ -1.91
RPN1	YHR027C	LDB17	Q12342	491 aa		3.14	□□□□□ -1.91
RPN1	YHR027C	ARP7	Q12406	477 aa		3.14	□□□□□ -1.91
RPN1	YHR027C	TY3A-I	Q99219	290 aa		3.14	□□□□□ -1.91
RPN1	YHR027C	COX4	P04037	155 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	GAL10	P04397	699 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	SNF4	P12904	322 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	PDC5	P16467	563 aa	Known RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	PFK1	P16861	987 aa	Known RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	CBF1	P17106	351 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	CHL1	P22516	861 aa	Predicted RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	CTR86	P25355	563 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	CIN8	P27895	1000 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	NUP2	P32499	720 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	PET309	P32522	965 aa	Predicted RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	CYS4	P32582	507 aa	Known RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	SPT10	P35208	640 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	MRPL37	P36532	105 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	BMT2	P38278	337 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	PCA1	P38360	1216 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	YMR262W	P38430	313 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	PHM8	P40025	321 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	KRE29	P40026	464 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	IRC24	P40580	263 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	EMP47	P43555	445 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	YJR141W	P47172	347 aa	Predicted RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	TOM22	P49334	152 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	GIM3	P53900	129 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	KTR5	P53966	522 aa	Predicted RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	KAP120	Q02932	1032 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	SPO77	Q06134	477 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	CDC73	Q06697	393 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	GSH2	Q08220	491 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	YPR1	Q12458	312 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	AVL9	Q12500	764 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	DCP1	Q12517	231 aa	Predicted RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	YCL001W-B	Q96VH2	84 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	IDI1	P15496	288 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	SRO9	P25567	434 aa	Known RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	THI4	P32318	326 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	IMP2'	P32351	346 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	GSH1	P32477	678 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	SSE2	P32590	693 aa	Known RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	YKL077W	P36081	392 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	TGL4	P36165	910 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	AKR1	P39010	764 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	TPA1	P40032	644 aa	Known RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	NDE1	P40215	560 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	YRB2	P40517	327 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	MSS2	P40990	351 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	MMM1	P41800	426 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	VMA13	P41807	478 aa	Known RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	GUF1	P46943	645 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	CCT8	P47079	568 aa	Known RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	SEH1	P53011	349 aa	Known RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	MNP1	P53163	194 aa	Predicted RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	NOP19	P53317	196 aa	Predicted RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	SPP1	Q03012	353 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	MTG1	Q03151	367 aa	Predicted RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	GIS4	Q04233	774 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	CAB1	Q04430	367 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	YPR091C	Q06833	770 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	NDE2	Q07500	545 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	YNG1	Q08465	219 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	YAH1	Q12184	172 aa	Known RBP	3.13	□□□□□ -1.91
RPN1	YHR027C	RAD59	Q12223	238 aa		3.13	□□□□□ -1.91
RPN1	YHR027C	BI4	P03879	638 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	STE3	P06783	470 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	MIS1	P09440	975 aa	Known RBP	3.12	□□□□□ -1.91
RPN1	YHR027C	KIN1	P13185	1064 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	RPL3	P14126	387 aa	Known RBP	3.12	□□□□□ -1.91
RPN1	YHR027C	ARO3	P14843	370 aa	Known RBP	3.12	□□□□□ -1.91
RPN1	YHR027C	APA2	P22108	325 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	PRP28	P23394	588 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	AAD3	P25612	363 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	CAP1	P28495	268 aa	Known RBP	3.12	□□□□□ -1.91
RPN1	YHR027C	CAF4	P36130	643 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	ECM13	P38195	257 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	GIC1	P38785	314 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	YER184C	P39961	794 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	ASG1	P40467	964 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	ALR2	P43553	858 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	RET2	P43621	546 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	UPF3	P48412	387 aa	Known RBP	3.12	□□□□□ -1.91
RPN1	YHR027C	YGR021W	P53212	290 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	YGR026W	P53217	278 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	PBP1	P53297	722 aa	Known RBP	3.12	□□□□□ -1.91
RPN1	YHR027C	YNL146W	P53906	100 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	MTD1	Q02046	320 aa	Known RBP	3.12	□□□□□ -1.91
RPN1	YHR027C	JIP4	Q03361	876 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	YDR131C	Q03899	556 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	PLM2	Q04383	521 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	YLR297W	Q05899	129 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	YPR084W	Q06821	456 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	IWR1	Q07532	353 aa	Predicted RBP	3.12	□□□□□ -1.91
RPN1	YHR027C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	not detected
RPN1	YHR027C	YPL191C	Q08930	360 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	MLH3	Q12083	715 aa		3.12	□□□□□ -1.91
RPN1	YHR027C	PET54	P10834	293 aa		3.12	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 16 ms