RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	FLO1	P32768	1537 aa		4.08	□□□□□ -1.76
UBX5	YDR330W	TUB2	P02557	457 aa	Known RBP	4.08	□□□□□ -1.76
UBX5	YDR330W	MET8	P15807	274 aa		4.08	□□□□□ -1.76
UBX5	YDR330W	MAK31	P23059	88 aa		4.08	□□□□□ -1.76
UBX5	YDR330W	GSY2	P27472	705 aa		4.08	□□□□□ -1.76
UBX5	YDR330W	MCM4	P30665	933 aa	Known RBP	4.08	□□□□□ -1.76
UBX5	YDR330W	SMY1	P32364	656 aa	Known RBP	4.08	□□□□□ -1.76
UBX5	YDR330W	DEF1	P35732	738 aa	Known RBP	4.08	□□□□□ -1.76
UBX5	YDR330W	YKT6	P36015	200 aa	Known RBP	4.08	□□□□□ -1.76
UBX5	YDR330W	YBL029W	P38201	376 aa		4.08	□□□□□ -1.76
UBX5	YDR330W	TDP1	P38319	544 aa		4.08	□□□□□ -1.76
UBX5	YDR330W	SIP4	P46954	829 aa		4.08	□□□□□ -1.76
UBX5	YDR330W	MRPL19	P53875	158 aa		4.08	□□□□□ -1.76
UBX5	YDR330W	YKU80	Q04437	629 aa		4.08	□□□□□ -1.76
UBX5	YDR330W	MRD1	Q06106	887 aa	Known RBP	4.08	□□□□□ -1.76
UBX5	YDR330W	SWT1	Q12104	458 aa		4.08	□□□□□ -1.76
UBX5	YDR330W	YBR255C-A	Q3E776	120 aa		4.08	□□□□□ -1.76
UBX5	YDR330W	YER175W-A	Q8TGU4	54 aa		4.08	□□□□□ -1.76
UBX5	YDR330W	RPL22A	P05749	121 aa	Known RBP	4.07	□□□□□ -1.76
UBX5	YDR330W	SES1	P07284	462 aa	Known RBP	4.07	□□□□□ -1.76
UBX5	YDR330W	VPS1	P21576	704 aa	Known RBP	4.07	□□□□□ -1.76
UBX5	YDR330W	SGF29	P25554	259 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	URK1	P27515	501 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	NFU1	P32860	256 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	KSP1	P38691	1029 aa	Known RBP	4.07	□□□□□ -1.76
UBX5	YDR330W	ARG2	P40360	574 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	PFK26	P40433	827 aa	Known RBP	4.07	□□□□□ -1.76
UBX5	YDR330W	UBP7	P40453	1071 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	IRC6	P43615	237 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	YIP4	P53093	235 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	DUO1	P53168	247 aa	Known RBP	4.07	□□□□□ -1.76
UBX5	YDR330W	NMA2	P53204	395 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	SNF12	P53628	566 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	BUD17	P53727	317 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	MYO5	Q04439	1219 aa	Known RBP	4.07	□□□□□ -1.76
UBX5	YDR330W	GTB1	Q04924	702 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	YLR287C	Q05881	355 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	ATG23	Q06671	453 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	SCM3	Q12334	223 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	RAD61	Q99359	647 aa		4.07	□□□□□ -1.76
UBX5	YDR330W	GCN4	P03069	281 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	SEC53	P07283	254 aa	Known RBP	4.06	□□□□□ -1.76
UBX5	YDR330W	OLE1	P21147	510 aa	Known RBP	4.06	□□□□□ -1.76
UBX5	YDR330W	RNR3	P21672	869 aa	Known RBP	4.06	□□□□□ -1.76
UBX5	YDR330W	ERG8	P24521	451 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	LRE1	P25579	583 aa	Known RBP	4.06	□□□□□ -1.76
UBX5	YDR330W	CNE1	P27825	502 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	CTS1	P29029	562 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	PMI40	P29952	429 aa	Known RBP	4.06	□□□□□ -1.76
UBX5	YDR330W	CDC5	P32562	705 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	PPS1	P38148	807 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	RXT2	P38255	430 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	CBR1	P38626	284 aa	Known RBP	4.06	□□□□□ -1.76
UBX5	YDR330W	PIH1	P38768	344 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	CSM2	P40465	213 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	PCI8	P40512	444 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	ARF3	P40994	183 aa	RIP-Chip data	4.06	□□□□□ -1.76	not detected
UBX5	YDR330W	TFG2	P41896	400 aa	Predicted RBP	4.06	□□□□□ -1.76
UBX5	YDR330W	CUE3	P53137	624 aa	Known RBP	4.06	□□□□□ -1.76
UBX5	YDR330W	TIM10	P87108	93 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	YSA1	Q01976	231 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	PRP42	Q03776	544 aa	Known RBP	4.06	□□□□□ -1.76
UBX5	YDR330W	YDL073W	Q07454	984 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	YOL073C	Q08232	322 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	GET3	Q12154	354 aa	Known RBP	4.06	□□□□□ -1.76
UBX5	YDR330W	YBR126W-A	Q8TGU7	68 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	HSH49	Q99181	213 aa	Predicted RBP	4.06	□□□□□ -1.76
UBX5	YDR330W	VCX1	Q99385	411 aa		4.06	□□□□□ -1.76
UBX5	YDR330W	FUR1	P18562	216 aa	Known RBP	4.05	□□□□□ -1.76
UBX5	YDR330W	PRO3	P32263	286 aa	Known RBP	4.05	□□□□□ -1.76
UBX5	YDR330W	TFC3	P34111	1160 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	YBR225W	P38321	900 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	NDC80	P40460	691 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	PMT6	P42934	759 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	STU2	P46675	888 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	AVT1	P47082	602 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	AAD10	P47182	288 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	CTR1	P49573	406 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	RPT6	Q01939	405 aa	Known RBP	4.05	□□□□□ -1.76
UBX5	YDR330W	NGL2	Q03264	515 aa	Known RBP	4.05	□□□□□ -1.76
UBX5	YDR330W	WAR1	Q03631	944 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	TRS23	Q03784	219 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	MFB1	Q04922	465 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	STP3	Q05937	343 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	GRX6	Q12438	231 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	CEX1	Q12453	761 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	NOP58	Q12499	511 aa	Known RBP	4.05	□□□□□ -1.76
UBX5	YDR330W	MYO1	P08964	1928 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	GSC2	P40989	1895 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	YPK1	P12688	680 aa	Known RBP	4.05	□□□□□ -1.76
UBX5	YDR330W	CDC15	P27636	974 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	BMH1	P29311	267 aa	Known RBP	4.05	□□□□□ -1.76
UBX5	YDR330W	SIP1	P32578	815 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	CAB3	P36076	571 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	ALY1	P36117	915 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	GMH1	P36125	273 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	PCL5	P38794	229 aa		4.05	□□□□□ -1.76
UBX5	YDR330W	ARO9	P38840	513 aa	Predicted RBP	4.05	□□□□□ -1.76
UBX5	YDR330W	UTP9	P38882	575 aa	Known RBP	4.05	□□□□□ -1.76
UBX5	YDR330W	PSD1	P39006	500 aa		4.05	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 21.8 ms