RNA–Protein interactions for RNA: YMR038C

CCS1, Transcript of Copper chaperone for superoxide dismutase Sod1p, yeast

Gene CCS1, Length 750 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCS1	YMR038C	UBC11	P52492	156 aa		5	□□□□□ -1.61
CCS1	YMR038C	RTC4	P53850	401 aa		5	□□□□□ -1.61
CCS1	YMR038C	REC102	Q02721	264 aa		5	□□□□□ -1.61
CCS1	YMR038C	FAP7	Q12055	197 aa	Predicted RBP	5	□□□□□ -1.61
CCS1	YMR038C	HRT3	Q12347	344 aa		5	□□□□□ -1.61
CCS1	YMR038C	PNS1	Q12412	539 aa		5	□□□□□ -1.61
CCS1	YMR038C	RPS21B	Q3E754	87 aa	Known RBP	5	□□□□□ -1.61
CCS1	YMR038C	ASP3-2	P0CX77	362 aa		4.99	□□□□□ -1.61
CCS1	YMR038C	ASP3-3	P0CX78	362 aa		4.99	□□□□□ -1.61
CCS1	YMR038C	ASP3-4	P0CX79	362 aa		4.99	□□□□□ -1.61
CCS1	YMR038C	ASP3-1	P0CZ17	362 aa		4.99	□□□□□ -1.61
CCS1	YMR038C	NOP9	P47077	666 aa	Known RBP	4.99	□□□□□ -1.61
CCS1	YMR038C	YAT1	P80235	687 aa		4.99	□□□□□ -1.61
CCS1	YMR038C	GPD1	Q00055	391 aa	Known RBP	4.99	□□□□□ -1.61
CCS1	YMR038C	YMR206W	Q03695	313 aa		4.99	□□□□□ -1.61
CCS1	YMR038C	CTK1	Q03957	528 aa	Known RBP	4.99	□□□□□ -1.61
CCS1	YMR038C	HFD1	Q04458	532 aa		4.99	□□□□□ -1.61
CCS1	YMR038C	CUR1	Q06469	252 aa		4.99	□□□□□ -1.61
CCS1	YMR038C	PSR2	Q07949	397 aa		4.99	□□□□□ -1.61
CCS1	YMR038C	YTM1	Q12024	460 aa	Predicted RBP	4.99	□□□□□ -1.61
CCS1	YMR038C	YPL150W	Q12152	901 aa		4.99	□□□□□ -1.61
CCS1	YMR038C	FOB1	O13329	566 aa		4.98	□□□□□ -1.61
CCS1	YMR038C	HIS4	P00815	799 aa	Known RBP	4.98	□□□□□ -1.61
CCS1	YMR038C	MTF1	P14908	341 aa	Known RBP	4.98	□□□□□ -1.61
CCS1	YMR038C	HIR1	P32479	840 aa		4.98	□□□□□ -1.61
CCS1	YMR038C	TFB1	P32776	642 aa		4.98	□□□□□ -1.61
CCS1	YMR038C	AGP2	P38090	596 aa		4.98	□□□□□ -1.61
CCS1	YMR038C	MAL33	P38157	468 aa		4.98	□□□□□ -1.61
CCS1	YMR038C	YHR054C	P38780	354 aa		4.98	□□□□□ -1.61
CCS1	YMR038C	NUP60	P39705	539 aa		4.98	□□□□□ -1.61
CCS1	YMR038C	HSH155	P49955	971 aa	Known RBP	4.98	□□□□□ -1.61
CCS1	YMR038C	SHE10	P53075	577 aa		4.98	□□□□□ -1.61
CCS1	YMR038C	HER2	Q03557	464 aa		4.98	□□□□□ -1.61
CCS1	YMR038C	OMS1	Q06668	471 aa		4.98	□□□□□ -1.61
CCS1	YMR038C	YCG1	Q06680	1035 aa		4.98	□□□□□ -1.61
CCS1	YMR038C	ECM3	Q99252	613 aa		4.98	□□□□□ -1.61
CCS1	YMR038C	BRR2	P32639	2163 aa	Known RBP	4.98	□□□□□ -1.61
CCS1	YMR038C	SSB1	P11484	613 aa	Known RBP	4.97	□□□□□ -1.61
CCS1	YMR038C	PGI1	P12709	554 aa	Known RBP	4.97	□□□□□ -1.61
CCS1	YMR038C	PPH22	P23595	377 aa		4.97	□□□□□ -1.61
CCS1	YMR038C	TSR4	P25040	408 aa		4.97	□□□□□ -1.61
CCS1	YMR038C	YPT7	P32939	208 aa		4.97	□□□□□ -1.61
CCS1	YMR038C	HIS7	P33734	552 aa	Known RBP	4.97	□□□□□ -1.61
CCS1	YMR038C	LEU5	P38702	357 aa		4.97	□□□□□ -1.61
CCS1	YMR038C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.97	□□□□□ -1.61	not detected
CCS1	YMR038C	FMP52	P40008	231 aa		4.97	□□□□□ -1.61
CCS1	YMR038C	SSB2	P40150	613 aa	Known RBP	4.97	□□□□□ -1.61
CCS1	YMR038C	MNN11	P46985	422 aa	Known RBP	4.97	□□□□□ -1.61
CCS1	YMR038C	NBP1	P52919	319 aa	Predicted RBP	4.97	□□□□□ -1.61
CCS1	YMR038C	CUE3	P53137	624 aa	Known RBP	4.97	□□□□□ -1.61
CCS1	YMR038C	COX18	P53239	316 aa		4.97	□□□□□ -1.61
CCS1	YMR038C	SMA1	Q02651	245 aa		4.97	□□□□□ -1.61
CCS1	YMR038C	VPS20	Q04272	221 aa		4.97	□□□□□ -1.61
CCS1	YMR038C	YPQ1	Q12010	308 aa		4.97	□□□□□ -1.61
CCS1	YMR038C	TPK1	P06244	397 aa		4.96	□□□□□ -1.62
CCS1	YMR038C	SIR3	P06701	978 aa		4.96	□□□□□ -1.62
CCS1	YMR038C	RPS21A	P0C0V8	87 aa	Known RBP	4.96	□□□□□ -1.62
CCS1	YMR038C	MUD1	P32605	298 aa	Known RBP	4.96	□□□□□ -1.62
CCS1	YMR038C	MOH1	P38191	138 aa		4.96	□□□□□ -1.62
CCS1	YMR038C	SHE3	P38272	425 aa	Known RBP	4.96	□□□□□ -1.62
CCS1	YMR038C	LCB2	P40970	561 aa		4.96	□□□□□ -1.62
CCS1	YMR038C	NPA3	P47122	385 aa		4.96	□□□□□ -1.62
CCS1	YMR038C	SEC5	P89102	971 aa		4.96	□□□□□ -1.62
CCS1	YMR038C	PRM6	Q04705	352 aa		4.96	□□□□□ -1.62
CCS1	YMR038C	YPS7	Q06325	596 aa		4.96	□□□□□ -1.62
CCS1	YMR038C	VPS36	Q06696	566 aa		4.96	□□□□□ -1.62
CCS1	YMR038C	YPL216W	Q08964	1102 aa		4.96	□□□□□ -1.62
CCS1	YMR038C	IRA1	P18963	3092 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	PRP8	P33334	2413 aa	Known RBP	4.95	□□□□□ -1.62
CCS1	YMR038C	POL2	P21951	2222 aa	Known RBP	4.95	□□□□□ -1.62
CCS1	YMR038C	IME1	P21190	360 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	RDS1	P25611	832 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	SEC65	P29478	273 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	RAD16	P31244	790 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	MVD1	P32377	396 aa	Known RBP	4.95	□□□□□ -1.62
CCS1	YMR038C	PRX1	P34227	261 aa	Known RBP	4.95	□□□□□ -1.62
CCS1	YMR038C	OAR1	P35731	278 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	OAF3	P36023	863 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	FAT1	P38225	669 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	PPE1	P38796	400 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	SHQ1	P40486	507 aa	Predicted RBP	4.95	□□□□□ -1.62
CCS1	YMR038C	PAN2	P53010	1115 aa	Predicted RBP	4.95	□□□□□ -1.62
CCS1	YMR038C	WAR1	Q03631	944 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	CEF1	Q03654	590 aa	Predicted RBP	4.95	□□□□□ -1.62
CCS1	YMR038C	SEG1	Q04279	960 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	BSP1	Q06604	576 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	VHS3	Q08438	674 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	RTK1	Q12100	620 aa	Predicted RBP	4.95	□□□□□ -1.62
CCS1	YMR038C	SGT2	Q12118	346 aa	Known RBP	4.95	□□□□□ -1.62
CCS1	YMR038C	NDJ1	Q12366	352 aa		4.95	□□□□□ -1.62
CCS1	YMR038C	CHS1	P08004	1131 aa		4.94	□□□□□ -1.62
CCS1	YMR038C	CDC15	P27636	974 aa		4.94	□□□□□ -1.62
CCS1	YMR038C	DAL3	P32459	195 aa		4.94	□□□□□ -1.62
CCS1	YMR038C	PET127	P32606	800 aa		4.94	□□□□□ -1.62
CCS1	YMR038C	SEC6	P32844	805 aa		4.94	□□□□□ -1.62
CCS1	YMR038C	SWE1	P32944	819 aa		4.94	□□□□□ -1.62
CCS1	YMR038C	DAS1	P47005	663 aa		4.94	□□□□□ -1.62
CCS1	YMR038C	TEL2	P53038	688 aa		4.94	□□□□□ -1.62
CCS1	YMR038C	YGR266W	P53326	701 aa		4.94	□□□□□ -1.62
CCS1	YMR038C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 98 ms