RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	PEX19	Q07418	342 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	HRK1	Q08732	759 aa	Known RBP	3.87	□□□□□ -1.79
NUP85	YJR042W	UAF30	Q08747	228 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	YOR019W	Q99248	730 aa		3.87	□□□□□ -1.79
NUP85	YJR042W	LYS2	P07702	1392 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	MER1	P16523	270 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	CAD1	P24813	409 aa	Known RBP	3.86	□□□□□ -1.79
NUP85	YJR042W	PHO91	P27514	894 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	DAD2	P36162	133 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	APE3	P37302	537 aa	Known RBP	3.86	□□□□□ -1.79
NUP85	YJR042W	RRM3	P38766	723 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	FSH1	P38777	243 aa	Known RBP	3.86	□□□□□ -1.79
NUP85	YJR042W	YNG2	P38806	282 aa	Known RBP	3.86	□□□□□ -1.79
NUP85	YJR042W	EPL1	P43572	832 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	RBS1	Q05672	457 aa	Known RBP	3.86	□□□□□ -1.79
NUP85	YJR042W	ATG38	Q05789	226 aa	Known RBP	3.86	□□□□□ -1.79
NUP85	YJR042W	NKP2	Q06162	153 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	VPS54	Q12071	889 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	HUA2	Q12134	243 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	ADF1	Q2V2Q1	113 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	ARG80	P07249	177 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	ERS1	P17261	260 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	PWP1	P21304	576 aa	Known RBP	3.86	□□□□□ -1.79
NUP85	YJR042W	SSE1	P32589	693 aa	Known RBP	3.86	□□□□□ -1.79
NUP85	YJR042W	PET127	P32606	800 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	YKT6	P36015	200 aa	Known RBP	3.86	□□□□□ -1.79
NUP85	YJR042W	GPT2	P36148	743 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	VPS45	P38932	577 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	RPN3	P40016	523 aa	Known RBP	3.86	□□□□□ -1.79
NUP85	YJR042W	JHD1	P40034	492 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	LRO1	P40345	661 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	INA22	P40576	216 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	AAD10	P47182	288 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	GCV2	P49095	1034 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	GLO1	P50107	326 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	CSI1	Q04368	295 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	STP3	Q05937	343 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	RCN2	Q12044	265 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	AFI1	Q99222	893 aa		3.86	□□□□□ -1.79
NUP85	YJR042W	ROM2	P51862	1356 aa	Known RBP	3.85	□□□□□ -1.79
NUP85	YJR042W	FBP1	P09201	348 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	ASF2	P32448	525 aa	Predicted RBP	3.85	□□□□□ -1.79
NUP85	YJR042W	ALY1	P36117	915 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	SER3	P40054	469 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	NEO1	P40527	1151 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	YIR007W	P40566	764 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	CEP3	P40969	608 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	SSU1	P41930	458 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	GSM1	P42950	618 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	EFM3	P47163	339 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	YKR011C	Q02209	353 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	SSL1	Q04673	461 aa	Predicted RBP	3.85	□□□□□ -1.79
NUP85	YJR042W	CRD1	Q07560	283 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	PLP2	Q12017	286 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	SVS1	Q12254	260 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	HER1	Q12276	1246 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	SFG1	Q12507	346 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	BUD14	P27637	709 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	YUH1	P35127	236 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	SMC2	P38989	1170 aa	Known RBP	3.85	□□□□□ -1.79
NUP85	YJR042W	CHS6	P40955	746 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	SHR5	P41912	237 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	PCL8	Q08966	492 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	UBX3	Q12229	455 aa		3.85	□□□□□ -1.79
NUP85	YJR042W	PRB1	P09232	635 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	PCK1	P10963	549 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	VPS33	P20795	691 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	PHO84	P25297	587 aa	Known RBP	3.84	□□□□□ -1.79
NUP85	YJR042W	BUD5	P25300	642 aa	Predicted RBP	3.84	□□□□□ -1.79
NUP85	YJR042W	PEP3	P27801	918 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	PRP45	P28004	379 aa	Predicted RBP	3.84	□□□□□ -1.79
NUP85	YJR042W	PRE4	P30657	266 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	GCD7	P32502	381 aa	Predicted RBP	3.84	□□□□□ -1.79
NUP85	YJR042W	SRB2	P34162	210 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	RRT2	P38332	387 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	YHR054C	P38780	354 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	ENP2	P48234	707 aa	Known RBP	3.84	□□□□□ -1.79
NUP85	YJR042W	FMS1	P50264	508 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	VPS4	P52917	437 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	YGL242C	P53066	181 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	AIM6	Q07716	390 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	BUD7	Q08754	746 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	SWT1	Q12104	458 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	YLL054C	Q12244	843 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	YPT6	Q99260	215 aa		3.84	□□□□□ -1.79
NUP85	YJR042W	COQ4	O13525	335 aa		3.83	□□□□□ -1.8
NUP85	YJR042W	YLR302C	O13544	120 aa		3.83	□□□□□ -1.8
NUP85	YJR042W	LPD1	P09624	499 aa	Known RBP	3.83	□□□□□ -1.8
NUP85	YJR042W	MRE11	P32829	692 aa		3.83	□□□□□ -1.8
NUP85	YJR042W	ECM21	P38167	1117 aa	Known RBP	3.83	□□□□□ -1.8
NUP85	YJR042W	PEX18	P38855	283 aa		3.83	□□□□□ -1.8
NUP85	YJR042W	BDH2	P39713	417 aa		3.83	□□□□□ -1.8
NUP85	YJR042W	OGG1	P53397	376 aa	Predicted RBP	3.83	□□□□□ -1.8
NUP85	YJR042W	YMR210W	Q03649	449 aa		3.83	□□□□□ -1.8
NUP85	YJR042W	VPS20	Q04272	221 aa		3.83	□□□□□ -1.8
NUP85	YJR042W	VPS36	Q06696	566 aa		3.83	□□□□□ -1.8
NUP85	YJR042W	LUC7	Q07508	261 aa	Predicted RBP	3.83	□□□□□ -1.8
NUP85	YJR042W	RPS9A	O13516	197 aa	Known RBP	3.83	□□□□□ -1.8
NUP85	YJR042W	PRC1	P00729	532 aa		3.83	□□□□□ -1.8
NUP85	YJR042W	RPS9B	P05755	195 aa	Known RBP	3.83	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms