RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	NMD4	Q12129	218 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	ISN1	Q99312	450 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	CDC24	P11433	854 aa	Predicted RBP	4.21	□□□□□ -1.74
UBP6	YFR010W	UNG1	P12887	359 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	STE12	P13574	688 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	EST1	P17214	699 aa	Predicted RBP	4.21	□□□□□ -1.74
UBP6	YFR010W	SIR1	P21691	654 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	CYS3	P31373	394 aa	Known RBP	4.21	□□□□□ -1.74
UBP6	YFR010W	COT1	P32798	439 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	YKR078W	P36158	585 aa	Known RBP	4.21	□□□□□ -1.74
UBP6	YFR010W	TOM71	P38825	639 aa	Known RBP	4.21	□□□□□ -1.74
UBP6	YFR010W	LIN1	P38852	340 aa	Predicted RBP	4.21	□□□□□ -1.74
UBP6	YFR010W	CHS6	P40955	746 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	SPT20	P50875	604 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	MCM6	P53091	1017 aa	Known RBP	4.21	□□□□□ -1.74
UBP6	YFR010W	PIB2	P53191	635 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	NGL3	Q03210	505 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	PLB2	Q03674	706 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	SIZ1	Q04195	904 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	MRPL1	Q04599	285 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	RPN7	Q06103	429 aa	Known RBP	4.21	□□□□□ -1.74
UBP6	YFR010W	YLR413W	Q06689	675 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	ENV7	Q12003	364 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	LDB17	Q12342	491 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	YOR111W	Q99210	232 aa		4.21	□□□□□ -1.74
UBP6	YFR010W	KIN2	P13186	1147 aa	Known RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	CBS1	P14066	229 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	ARO3	P14843	370 aa	Known RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	BUD5	P25300	642 aa	Predicted RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	APL1	P27351	700 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	PEP3	P27801	918 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	ERV1	P27882	189 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	EFT1	P32324	842 aa	Known RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	TPO5	P36029	618 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	GLG1	P36143	616 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	SRO77	P38163	1010 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	SRP68	P38687	599 aa	Known RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	KSP1	P38691	1029 aa	Known RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	TCD1	P38756	429 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	LRO1	P40345	661 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	YRB2	P40517	327 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	MND2	P40577	368 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	VMA13	P41807	478 aa	Known RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	ROK1	P45818	564 aa	Predicted RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	CUE3	P53137	624 aa	Known RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	DCP2	P53550	970 aa	Known RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	KTR6	P54070	446 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	BCP1	Q06338	283 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	PEX19	Q07418	342 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	NGL1	Q08213	363 aa	Known RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	BRX1	Q08235	291 aa	Known RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	YOR389W	Q08912	624 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	SWT1	Q12104	458 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	YLL058W	Q12198	575 aa		4.2	□□□□□ -1.74
UBP6	YFR010W	LSP1	Q12230	341 aa	Known RBP	4.2	□□□□□ -1.74
UBP6	YFR010W	RTC1	Q08281	1341 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	CDC26	P14724	124 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	FUS3	P16892	353 aa	Known RBP	4.19	□□□□□ -1.74
UBP6	YFR010W	PMA2	P19657	947 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
UBP6	YFR010W	RPI1	P23250	407 aa	Known RBP	4.19	□□□□□ -1.74
UBP6	YFR010W	SWI4	P25302	1093 aa	Known RBP	4.19	□□□□□ -1.74
UBP6	YFR010W	BOS1	P25385	244 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	FRD1	P32614	470 aa	Known RBP	4.19	□□□□□ -1.74
UBP6	YFR010W	MIA40	P36046	403 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	MAK5	P38112	773 aa	Predicted RBP	4.19	□□□□□ -1.74
UBP6	YFR010W	ALY2	P47029	1046 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	HXT16	P47185	567 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	RET3	P53600	189 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	REG1	Q00816	1014 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	RPM2	Q02773	1202 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	VPS20	Q04272	221 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	URC2	Q04411	772 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	ROY1	Q04847	553 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	DUS4	Q06063	367 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	ATG26	Q06321	1198 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
UBP6	YFR010W	ULA1	Q12059	462 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	NBP2	Q12163	236 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	GIS3	Q12418	502 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	AFI1	Q99222	893 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	YML133C	Q03099	1374 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	YLL066C	Q99208	1374 aa		4.19	□□□□□ -1.74
UBP6	YFR010W	LAM4	P38800	1345 aa		4.18	□□□□□ -1.74
UBP6	YFR010W	TUB2	P02557	457 aa	Known RBP	4.18	□□□□□ -1.74
UBP6	YFR010W	CBP2	P03874	630 aa	Predicted RBP	4.18	□□□□□ -1.74
UBP6	YFR010W	ARG81	P05085	880 aa		4.18	□□□□□ -1.74
UBP6	YFR010W	STE3	P06783	470 aa		4.18	□□□□□ -1.74
UBP6	YFR010W	FBP1	P09201	348 aa		4.18	□□□□□ -1.74
UBP6	YFR010W	RPL1A	P0CX43	217 aa	Known RBP	4.18	□□□□□ -1.74
UBP6	YFR010W	RPL1B	P0CX44	217 aa	Known RBP	4.18	□□□□□ -1.74
UBP6	YFR010W	YCK1	P23291	538 aa		4.18	□□□□□ -1.74
UBP6	YFR010W	ERG1	P32476	496 aa	Known RBP	4.18	□□□□□ -1.74
UBP6	YFR010W	HIR2	P32480	875 aa		4.18	□□□□□ -1.74
UBP6	YFR010W	LTV1	P34078	463 aa		4.18	□□□□□ -1.74
UBP6	YFR010W	YKR015C	P36111	568 aa		4.18	□□□□□ -1.74
UBP6	YFR010W	WSS1	P38838	269 aa		4.18	□□□□□ -1.74
UBP6	YFR010W	SSP120	P39931	234 aa	Known RBP	4.18	□□□□□ -1.74
UBP6	YFR010W	RRT14	P40470	206 aa		4.18	□□□□□ -1.74
UBP6	YFR010W	ULP2	P40537	1034 aa	Predicted RBP	4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 44.6 ms