RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	CLB4	P24871	460 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	GSY2	P27472	705 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	BMH1	P29311	267 aa	Known RBP	4.64	□□□□□ -1.67
CDC48	YDL126C	WHI3	P34761	661 aa	Known RBP	4.64	□□□□□ -1.67
CDC48	YDL126C	ADH5	P38113	351 aa	Known RBP	4.64	□□□□□ -1.67
CDC48	YDL126C	HSL7	P38274	827 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	MRX1	P40050	688 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	PUG1	P40100	303 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	SIP4	P46954	829 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	SGF73	P53165	657 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	SDH1	Q00711	640 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	YMR111C	Q04461	462 aa	Predicted RBP	4.64	□□□□□ -1.67
CDC48	YDL126C	SKG3	Q06315	1026 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	RKM1	Q08961	583 aa	Predicted RBP	4.64	□□□□□ -1.67
CDC48	YDL126C	TIP41	Q12199	356 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	YPR089W	O13585	888 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	ARG81	P05085	880 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	PMS1	P14242	873 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	NMT1	P14743	455 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	CKA1	P15790	372 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	FUR1	P18562	216 aa	Known RBP	4.64	□□□□□ -1.67
CDC48	YDL126C	CPR5	P35176	225 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	CST26	P38226	397 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	CCZ1	P38273	704 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	YHR131C	P38835	850 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	BUD16	P39988	312 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	PKP1	P40530	394 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	TNA1	P53322	534 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	YDR444W	Q04093	687 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	GTB1	Q04924	702 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	SYO1	Q07395	620 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	VAM6	Q07468	1049 aa		4.64	□□□□□ -1.67
CDC48	YDL126C	PAR32	Q12515	295 aa	Known RBP	4.64	□□□□□ -1.67
CDC48	YDL126C	NUC1	P08466	329 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	TUP1	P16649	713 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	ALG1	P16661	449 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	SEC15	P22224	910 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	HSP30	P25619	332 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	MF(ALPHA)2	P32435	120 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	SET3	P36124	751 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	STL1	P39932	569 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	SNF12	P53628	566 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	TEP1	P53916	434 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	TRM44	Q02648	567 aa	Known RBP	4.63	□□□□□ -1.67
CDC48	YDL126C	DSE3	Q08729	430 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	YOR352W	Q08816	343 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	SKS1	Q12505	502 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	RPS4A	P0CX35	261 aa	Known RBP	4.63	□□□□□ -1.67
CDC48	YDL126C	RPS4B	P0CX36	261 aa	Known RBP	4.63	□□□□□ -1.67
CDC48	YDL126C	KSS1	P14681	368 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	IME1	P21190	360 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	SNT1	P25357	1226 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	ADK2	P26364	225 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	PEX32	P38292	413 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	PEX7	P39108	375 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	YIL001W	P40560	513 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	IPI3	P53877	555 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	REG1	Q00816	1014 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	PTA1	Q01329	785 aa	Predicted RBP	4.63	□□□□□ -1.67
CDC48	YDL126C	CWC21	Q03375	135 aa	Known RBP	4.63	□□□□□ -1.67
CDC48	YDL126C	TPP1	Q03796	238 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	MMR1	Q06324	491 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	MCP2	Q06567	569 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	TGL5	Q12043	749 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	FRE6	Q12473	712 aa		4.63	□□□□□ -1.67
CDC48	YDL126C	PMA1	P05030	918 aa	Known RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	MSS116	P15424	664 aa	Known RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	OM45	P16547	393 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	TYR1	P20049	452 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	ADE2	P21264	571 aa	Known RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	TRX1	P22217	103 aa	Known RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	RPD3	P32561	433 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	STV1	P37296	890 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	YBR242W	P38331	238 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	VPS45	P38932	577 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	EAF5	P39995	279 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	GID8	P40208	455 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	CTK3	P46963	296 aa	Predicted RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	SNX4	P47057	423 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	BUD9	P53226	547 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	TOF1	P53840	1238 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	RBA50	Q04418	439 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	DPB4	Q04603	196 aa	Known RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	SSL1	Q04673	461 aa	Predicted RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	NNT1	Q05874	261 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	ECM22	Q05958	814 aa	Predicted RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	BLS1	Q06071	122 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	CMS1	Q07897	291 aa	Known RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	HRK1	Q08732	759 aa	Known RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	ATP16	Q12165	160 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	NOT5	Q12514	560 aa	Predicted RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	TUS1	Q06412	1307 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	HIS4	P00815	799 aa	Known RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	SGF29	P25554	259 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	RSC6	P25632	483 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	GPI10	P30777	616 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	SAC6	P32599	642 aa	Known RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	YHR202W	P38887	602 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	SPT8	P38915	602 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	TFG2	P41896	400 aa	Predicted RBP	4.62	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 22.4 ms