RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	CIN1	P40987	1014 aa		3.95	□□□□□ -1.78
CUP9	YPL177C	COG1	P53079	417 aa		3.95	□□□□□ -1.78
CUP9	YPL177C	IDP3	P53982	420 aa	Known RBP	3.95	□□□□□ -1.78
CUP9	YPL177C	SNU56	Q03782	492 aa	Known RBP	3.95	□□□□□ -1.78
CUP9	YPL177C	CSR1	Q06705	408 aa	Known RBP	3.95	□□□□□ -1.78
CUP9	YPL177C	TRM8	Q12009	286 aa		3.95	□□□□□ -1.78
CUP9	YPL177C	LYS21	Q12122	440 aa	Known RBP	3.95	□□□□□ -1.78
CUP9	YPL177C	SSM4	P40318	1319 aa		3.95	□□□□□ -1.78
CUP9	YPL177C	SNF1	P06782	633 aa	Known RBP	3.94	□□□□□ -1.78
CUP9	YPL177C	NUP120	P35729	1037 aa		3.94	□□□□□ -1.78
CUP9	YPL177C	GEX2	P36173	615 aa		3.94	□□□□□ -1.78
CUP9	YPL177C	ERV46	P39727	415 aa		3.94	□□□□□ -1.78
CUP9	YPL177C	JHD1	P40034	492 aa		3.94	□□□□□ -1.78
CUP9	YPL177C	CTF18	P49956	741 aa		3.94	□□□□□ -1.78
CUP9	YPL177C	YPR003C	P53394	754 aa		3.94	□□□□□ -1.78
CUP9	YPL177C	CSL4	P53859	292 aa	Predicted RBP	3.94	□□□□□ -1.78
CUP9	YPL177C	ADE16	P54113	591 aa	Known RBP	3.94	□□□□□ -1.78
CUP9	YPL177C	YML131W	Q03102	365 aa		3.94	□□□□□ -1.78
CUP9	YPL177C	LEA1	Q08963	238 aa	Predicted RBP	3.94	□□□□□ -1.78
CUP9	YPL177C	CRC1	Q12289	327 aa		3.94	□□□□□ -1.78
CUP9	YPL177C	TY2A-LR1	P0C2J4	438 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	YMR085W	P0CF18	432 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	TY2A-F	P0CX61	438 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	TY2A-GR2	P0CX62	438 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	YSP3	P25036	478 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	TY2A-C	P25383	438 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	LRE1	P25579	583 aa	Known RBP	3.93	□□□□□ -1.78
CUP9	YPL177C	RAD16	P31244	790 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	XRS2	P33301	854 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	YIL161W	P40449	235 aa	Known RBP	3.93	□□□□□ -1.78
CUP9	YPL177C	IML2	P47031	731 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	MSY1	P48527	492 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	YNL058C	P53947	316 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	TY2A-DR2	Q03483	438 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	TMA16	Q08687	178 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	SWT1	Q12104	458 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	TY2A-B	Q12260	438 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	TY2A-OR2	Q12293	438 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	TY2A-DR1	Q12392	438 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	TY2A-OR1	Q12439	438 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	TY2A-DR3	Q99303	438 aa		3.93	□□□□□ -1.78
CUP9	YPL177C	CET1	O13297	549 aa	Predicted RBP	3.92	□□□□□ -1.78
CUP9	YPL177C	GUK1	P15454	187 aa	Known RBP	3.92	□□□□□ -1.78
CUP9	YPL177C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	3.92	□□□□□ -1.78	not detected
CUP9	YPL177C	YAP1	P19880	650 aa	Known RBP	3.92	□□□□□ -1.78
CUP9	YPL177C	DJP1	P40564	432 aa		3.92	□□□□□ -1.78
CUP9	YPL177C	PSP1	P50896	841 aa	Known RBP	3.92	□□□□□ -1.78
CUP9	YPL177C	VID22	Q05934	901 aa		3.92	□□□□□ -1.78
CUP9	YPL177C	NEW1	Q08972	1196 aa	Known RBP	3.92	□□□□□ -1.78
CUP9	YPL177C	PCT1	P13259	424 aa		3.91	□□□□□ -1.78
CUP9	YPL177C	SLC1	P33333	303 aa		3.91	□□□□□ -1.78
CUP9	YPL177C	TEF4	P36008	412 aa	Known RBP	3.91	□□□□□ -1.78
CUP9	YPL177C	AXL2	P38928	823 aa		3.91	□□□□□ -1.78
CUP9	YPL177C	UME6	P39001	836 aa		3.91	□□□□□ -1.78
CUP9	YPL177C	MAF1	P41910	395 aa		3.91	□□□□□ -1.78
CUP9	YPL177C	IRC7	P43623	340 aa		3.91	□□□□□ -1.78
CUP9	YPL177C	LSC1	P53598	329 aa	Known RBP	3.91	□□□□□ -1.78
CUP9	YPL177C	REG1	Q00816	1014 aa		3.91	□□□□□ -1.78
CUP9	YPL177C	ECM16	Q04217	1267 aa	Known RBP	3.91	□□□□□ -1.78
CUP9	YPL177C	ATG23	Q06671	453 aa		3.91	□□□□□ -1.78
CUP9	YPL177C	THI3	Q07471	609 aa		3.91	□□□□□ -1.78
CUP9	YPL177C	PFA4	Q12006	378 aa		3.91	□□□□□ -1.78
CUP9	YPL177C	BAG7	Q12128	409 aa		3.91	□□□□□ -1.78
CUP9	YPL177C	ILS1	P09436	1072 aa	Known RBP	3.9	□□□□□ -1.79
CUP9	YPL177C	SPO16	P17122	198 aa		3.9	□□□□□ -1.79
CUP9	YPL177C	PSD1	P39006	500 aa		3.9	□□□□□ -1.79
CUP9	YPL177C	ASE1	P50275	885 aa		3.9	□□□□□ -1.79
CUP9	YPL177C	YRB30	P53107	440 aa	Predicted RBP	3.9	□□□□□ -1.79
CUP9	YPL177C	GIS2	P53849	153 aa	Known RBP RIP-Chip data	3.9	□□□□□ -1.79	not detected
CUP9	YPL177C	NUP53	Q03790	475 aa		3.9	□□□□□ -1.79
CUP9	YPL177C	SSP2	Q08646	371 aa		3.9	□□□□□ -1.79
CUP9	YPL177C	SUI3	P09064	285 aa	Known RBP	3.89	□□□□□ -1.79
CUP9	YPL177C	YER190C-B	P0CX94	160 aa		3.89	□□□□□ -1.79
CUP9	YPL177C	YEL077W-A	P0CX95	160 aa		3.89	□□□□□ -1.79
CUP9	YPL177C	YGR296C-B	P0CX96	160 aa		3.89	□□□□□ -1.79
CUP9	YPL177C	YPL283W-B	P0CX97	160 aa		3.89	□□□□□ -1.79
CUP9	YPL177C	YPR204C-A	P0CX98	160 aa		3.89	□□□□□ -1.79
CUP9	YPL177C	CNS1	P33313	385 aa		3.89	□□□□□ -1.79
CUP9	YPL177C	IST3	P40565	148 aa	Predicted RBP	3.89	□□□□□ -1.79
CUP9	YPL177C	CDC1	P40986	491 aa		3.89	□□□□□ -1.79
CUP9	YPL177C	CRN1	Q06440	651 aa		3.89	□□□□□ -1.79
CUP9	YPL177C	SWA2	Q06677	668 aa		3.89	□□□□□ -1.79
CUP9	YPL177C	YLR302C	O13544	120 aa		3.88	□□□□□ -1.79
CUP9	YPL177C	YPR089W	O13585	888 aa		3.88	□□□□□ -1.79
CUP9	YPL177C	GAL4	P04386	881 aa		3.88	□□□□□ -1.79
CUP9	YPL177C	ERG8	P24521	451 aa		3.88	□□□□□ -1.79
CUP9	YPL177C	COQ3	P27680	312 aa		3.88	□□□□□ -1.79
CUP9	YPL177C	GCS1	P35197	352 aa		3.88	□□□□□ -1.79
CUP9	YPL177C	UBP13	P38187	747 aa		3.88	□□□□□ -1.79
CUP9	YPL177C	CCT4	P39078	528 aa	Known RBP	3.88	□□□□□ -1.79
CUP9	YPL177C	ORC5	P50874	479 aa		3.88	□□□□□ -1.79
CUP9	YPL177C	SNO4	Q04902	237 aa		3.88	□□□□□ -1.79
CUP9	YPL177C	HSP33	Q08914	237 aa	Known RBP	3.88	□□□□□ -1.79
CUP9	YPL177C	HSP32	Q08992	237 aa		3.88	□□□□□ -1.79
CUP9	YPL177C	HER1	Q12276	1246 aa		3.88	□□□□□ -1.79
CUP9	YPL177C	YPT1	P01123	206 aa	Known RBP	3.87	□□□□□ -1.79
CUP9	YPL177C	DPB3	P27344	201 aa		3.87	□□□□□ -1.79
CUP9	YPL177C	MSS51	P32335	436 aa		3.87	□□□□□ -1.79
CUP9	YPL177C	RPT3	P33298	428 aa	Known RBP	3.87	□□□□□ -1.79
CUP9	YPL177C	RRN3	P36070	627 aa		3.87	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 19.4 ms