RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W SNT2P53127 1403 aa1.29□□□□□ -2.2
CDC39YCR093W YCR015CP25616 317 aa1.29□□□□□ -2.2
CDC39YCR093W STE14P32584 239 aa1.29□□□□□ -2.2
CDC39YCR093W PHO11P35842 467 aa1.29□□□□□ -2.2
CDC39YCR093W ELF1P36053 145 aa1.29□□□□□ -2.2
CDC39YCR093W ENP1P38333 483 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W PHO12P38693 467 aa1.29□□□□□ -2.2
CDC39YCR093W JHD1P40034 492 aa1.29□□□□□ -2.2
CDC39YCR093W PAN2P53010 1115 aaPredicted RBP1.29□□□□□ -2.2
CDC39YCR093W COG1P53079 417 aa1.29□□□□□ -2.2
CDC39YCR093W YIP4P53093 235 aa1.29□□□□□ -2.2
CDC39YCR093W YAT1P80235 687 aa1.29□□□□□ -2.2
CDC39YCR093W GIR2Q03768 265 aaPredicted RBP1.29□□□□□ -2.2
CDC39YCR093W SWF1Q04629 336 aa1.29□□□□□ -2.2
CDC39YCR093W DUS4Q06063 367 aa1.29□□□□□ -2.2
CDC39YCR093W YPS7Q06325 596 aa1.29□□□□□ -2.2
CDC39YCR093W CDA2Q06703 312 aa1.29□□□□□ -2.2
CDC39YCR093W YOL073CQ08232 322 aa1.29□□□□□ -2.2
CDC39YCR093W FMP40Q08968 688 aaPredicted RBP1.29□□□□□ -2.2
CDC39YCR093W SPS4P09937 338 aa1.29□□□□□ -2.2
CDC39YCR093W SPO12P17123 173 aa1.29□□□□□ -2.2
CDC39YCR093W UBC1P21734 215 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W LCB1P25045 558 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W YIH1P25637 258 aa1.29□□□□□ -2.2
CDC39YCR093W RSM22P36056 628 aa1.29□□□□□ -2.2
CDC39YCR093W RKM3P38222 552 aa1.29□□□□□ -2.2
CDC39YCR093W HXT6P39003 570 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W HXT7P39004 570 aa1.29□□□□□ -2.2
CDC39YCR093W DPB11P47027 764 aaPredicted RBP1.29□□□□□ -2.2
CDC39YCR093W ZAP1P47043 880 aa1.29□□□□□ -2.2
CDC39YCR093W AAD10P47182 288 aa1.29□□□□□ -2.2
CDC39YCR093W ORC5P50874 479 aa1.29□□□□□ -2.2
CDC39YCR093W MNP1P53163 194 aaPredicted RBP1.29□□□□□ -2.2
CDC39YCR093W MEP3P53390 489 aa1.29□□□□□ -2.2
CDC39YCR093W BUD17P53727 317 aa1.29□□□□□ -2.2
CDC39YCR093W VTA1Q06263 330 aa1.29□□□□□ -2.2
CDC39YCR093W ISA2Q12425 185 aa1.29□□□□□ -2.2
CDC39YCR093W MPD2Q99316 277 aa1.29□□□□□ -2.2
CDC39YCR093W LAM4P38800 1345 aa1.29□□□□□ -2.2
CDC39YCR093W NUP170P38181 1502 aa1.29□□□□□ -2.2
CDC39YCR093W NUP188P52593 1655 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W HOM3P10869 527 aa1.29□□□□□ -2.2
CDC39YCR093W RPB8P20436 146 aa1.29□□□□□ -2.2
CDC39YCR093W RNQ1P25367 405 aa1.29□□□□□ -2.2
CDC39YCR093W GYP6P32806 458 aa1.29□□□□□ -2.2
CDC39YCR093W SSU1P41930 458 aa1.29□□□□□ -2.2
CDC39YCR093W DIA3P52290 468 aa1.29□□□□□ -2.2
CDC39YCR093W YNL234WP53857 426 aa1.29□□□□□ -2.2
CDC39YCR093W VPS36Q06696 566 aa1.29□□□□□ -2.2
CDC39YCR093W IZH3Q07959 543 aa1.29□□□□□ -2.2
CDC39YCR093W YLR040CQ07988 224 aa1.29□□□□□ -2.2
CDC39YCR093W IRC10Q08118 586 aa1.29□□□□□ -2.2
CDC39YCR093W IRC13Q08630 104 aa1.29□□□□□ -2.2
CDC39YCR093W ULA1Q12059 462 aa1.29□□□□□ -2.2
CDC39YCR093W HSP82P02829 709 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W SEC18P18759 758 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W PWP1P21304 576 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W YKL023WP36103 277 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W UIP3P39547 235 aa1.29□□□□□ -2.2
CDC39YCR093W YJR120WP47157 116 aa1.29□□□□□ -2.2
CDC39YCR093W GPG1P53130 126 aa1.29□□□□□ -2.2
CDC39YCR093W YPL071CQ02864 156 aa1.29□□□□□ -2.2
CDC39YCR093W YMR178WQ03219 274 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W TMN2Q04562 672 aa1.29□□□□□ -2.2
CDC39YCR093W PUF2Q12221 1075 aaKnown RBP RIP-Chip data1.29□□□□□ -2.2not detected
CDC39YCR093W UFD4P33202 1483 aa1.29□□□□□ -2.2
CDC39YCR093W PRE4P30657 266 aa1.28□□□□□ -2.2
CDC39YCR093W DBF20P32328 564 aa1.28□□□□□ -2.2
CDC39YCR093W IMP2'P32351 346 aa1.28□□□□□ -2.2
CDC39YCR093W YNG2P38806 282 aaKnown RBP1.28□□□□□ -2.2
CDC39YCR093W BUR6P40096 142 aa1.28□□□□□ -2.2
CDC39YCR093W PMT6P42934 759 aa1.28□□□□□ -2.2
CDC39YCR093W UTP21Q06078 939 aaPredicted RBP1.28□□□□□ -2.2
CDC39YCR093W RIM20Q12033 661 aa1.28□□□□□ -2.2
CDC39YCR093W BCK1Q01389 1478 aa1.28□□□□□ -2.2
CDC39YCR093W RAP1P11938 827 aa1.28□□□□□ -2.2
CDC39YCR093W PRO3P32263 286 aaKnown RBP1.28□□□□□ -2.2
CDC39YCR093W MIC60P36112 540 aa1.28□□□□□ -2.2
CDC39YCR093W AAP1P37898 856 aaKnown RBP1.28□□□□□ -2.2
CDC39YCR093W TPO3Q06451 622 aa1.28□□□□□ -2.2
CDC39YCR093W YDL177CQ12257 170 aa1.28□□□□□ -2.2
CDC39YCR093W RNR3P21672 869 aaKnown RBP1.28□□□□□ -2.2
CDC39YCR093W SAC1P32368 623 aaKnown RBP1.28□□□□□ -2.2
CDC39YCR093W YME1P32795 747 aa1.28□□□□□ -2.2
CDC39YCR093W BCS1P32839 456 aa1.28□□□□□ -2.2
CDC39YCR093W MMS4P38257 691 aa1.28□□□□□ -2.2
CDC39YCR093W UBA4P38820 440 aa1.28□□□□□ -2.2
CDC39YCR093W BST1P43571 1029 aa1.28□□□□□ -2.2
CDC39YCR093W IRC5P43610 853 aa1.28□□□□□ -2.2
CDC39YCR093W ALK1P43633 760 aaKnown RBP1.28□□□□□ -2.2
CDC39YCR093W CTF18P49956 741 aa1.28□□□□□ -2.2
CDC39YCR093W YNL181WP53878 407 aa1.28□□□□□ -2.2
CDC39YCR093W HOF1Q05080 669 aa1.28□□□□□ -2.2
CDC39YCR093W MCP2Q06567 569 aa1.28□□□□□ -2.2
CDC39YCR093W VAM6Q07468 1049 aa1.28□□□□□ -2.2
CDC39YCR093W ESC8Q08119 714 aa1.28□□□□□ -2.2
CDC39YCR093W SIR3P06701 978 aa1.28□□□□□ -2.2
CDC39YCR093W ESL2P36168 1195 aa1.28□□□□□ -2.2
CDC39YCR093W VBA2P38358 474 aaKnown RBP1.28□□□□□ -2.2
CDC39YCR093W DIA4P38705 446 aaPredicted RBP1.28□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 207.4 ms